Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.34□□□□□ -1.72
SOX4Q06945 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SOX4Q06945 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
SOX4Q06945 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
SOX4Q06945 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SOX4Q06945 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX4Q06945 AC022893.2-201ENST00000564832 3296 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX4Q06945 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.33□□□□□ -1.72
SOX4Q06945 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX4Q06945 RNA5SP235-201ENST00000365411 114 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 RNU6-17P-201ENST00000384245 107 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 RNU6-318P-201ENST00000384283 103 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 RNU6-18P-201ENST00000384527 107 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 RNU6-1081P-201ENST00000384537 107 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 RNU6ATAC15P-201ENST00000408279 121 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 RNU6-651P-201ENST00000411040 105 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.33□□□□□ -1.72
SOX4Q06945 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX4Q06945 AC009296.1-201ENST00000443146 155 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 RN7SL542P-201ENST00000467147 294 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 RPL23AP75-201ENST00000491601 451 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX4Q06945 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 U6.106-201ENST00000636360 105 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
SOX4Q06945 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SOX4Q06945 AC016588.2-201ENST00000632484 3021 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
SOX4Q06945 AC018529.3-201ENST00000624212 2254 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.33□□□□□ -1.72
SOX4Q06945 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX4Q06945 MARK2P15-201ENST00000432204 2186 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SOX4Q06945 ZNF826P-207ENST00000622273 1910 ntBASIC4.33□□□□□ -1.72
SOX4Q06945 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
SOX4Q06945 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.32□□□□□ -1.72
SOX4Q06945 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.32□□□□□ -1.72
SOX4Q06945 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SOX4Q06945 RNA5SP399-201ENST00000364003 117 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 RNU6-879P-201ENST00000364328 108 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 SNORD50.2-201ENST00000365465 70 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SOX4Q06945 RNU6-1279P-201ENST00000383917 103 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 RNU6-213P-201ENST00000384051 104 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 RNU6-629P-201ENST00000384061 103 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 RNU6-843P-201ENST00000384454 104 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 Y_RNA.569-201ENST00000384749 103 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 RNU4-30P-201ENST00000410245 143 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 RN7SKP27-201ENST00000410684 333 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 CYCSP19-201ENST00000411715 316 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.32□□□□□ -1.72
SOX4Q06945 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX4Q06945 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX4Q06945 AP000907.1-201ENST00000428428 510 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 AC007919.1-201ENST00000429380 217 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX4Q06945 AL078601.1-201ENST00000444542 271 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 Y_RNA.679-201ENST00000516416 91 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 IGKV2-38-201ENST00000517443 247 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 YPEL5P3-201ENST00000547227 352 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX4Q06945 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.32□□□□□ -1.72
SOX4Q06945 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.32□□□□□ -1.72
SOX4Q06945 AC011921.3-201ENST00000605540 361 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 MIR7154-201ENST00000620673 73 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 SCARNA4-201ENST00000629045 128 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SOX4Q06945 AC009541.1-201ENST00000438279 2662 ntBASIC4.32□□□□□ -1.72
SOX4Q06945 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SOX4Q06945 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
SOX4Q06945 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.32□□□□□ -1.72
SOX4Q06945 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.32□□□□□ -1.72
SOX4Q06945 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SOX4Q06945 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
SOX4Q06945 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.31□□□□□ -1.72
SOX4Q06945 RNU6-78P-201ENST00000362897 107 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SOX4Q06945 Y_RNA.590-201ENST00000410140 107 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.31□□□□□ -1.72
SOX4Q06945 CYP4F29P-201ENST00000420685 446 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.31□□□□□ -1.72
SOX4Q06945 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.31□□□□□ -1.72
SOX4Q06945 HLA-N-201ENST00000437516 135 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 RPS15AP7-201ENST00000439294 405 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.31□□□□□ -1.72
SOX4Q06945 ANP32BP2-201ENST00000454525 545 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 AC146944.2-203ENST00000502493 354 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 AC139495.1-202ENST00000513164 354 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 AL078605.1-201ENST00000603529 500 ntBASIC4.31□□□□□ -1.72
SOX4Q06945 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.31□□□□□ -1.72
SOX4Q06945 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.31□□□□□ -1.72
SOX4Q06945 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SOX4Q06945 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
SOX4Q06945 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.31□□□□□ -1.72
SOX4Q06945 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SOX4Q06945 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SOX4Q06945 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SOX4Q06945 RNU6-968P-201ENST00000384076 107 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms