Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLRN1P58418 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.39□□□□□ -1.87
CLRN1P58418 RNU6-105P-201ENST00000363909 104 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 RNU6-270P-201ENST00000364131 105 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 SNORD14.1-201ENST00000365609 90 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 SET-203ENST00000372688 801 ntTSL 2 BASIC3.39□□□□□ -1.87
CLRN1P58418 RNU6-1035P-201ENST00000384477 107 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 RNU1-89P-201ENST00000384592 164 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 MIR1302-3-201ENST00000408128 138 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC092423.1-201ENST00000430165 186 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 OR2AQ1P-201ENST00000451972 200 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.39□□□□□ -1.87
CLRN1P58418 AC079354.2-201ENST00000453523 154 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.39□□□□□ -1.87
CLRN1P58418 AC010655.3-201ENST00000478818 450 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 RPL23AP49-201ENST00000492925 468 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 RNU1-61P-201ENST00000516107 151 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 SNORA70.14-201ENST00000516205 110 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 SNORA40.14-201ENST00000516543 86 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 SNORA31.18-201ENST00000517043 134 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC022616.4-201ENST00000522985 181 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.39□□□□□ -1.87
CLRN1P58418 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.39□□□□□ -1.87
CLRN1P58418 AP002404.1-201ENST00000532005 451 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.39□□□□□ -1.87
CLRN1P58418 AC107016.1-201ENST00000550463 337 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AMZ2P1-203ENST00000565833 850 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.39□□□□□ -1.87
CLRN1P58418 MIR4286-201ENST00000580651 93 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC006006.1-201ENST00000603082 144 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC024153.1-201ENST00000603103 365 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 PRR13P7-201ENST00000605538 430 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLRN1P58418 MIR6875-201ENST00000617506 72 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC097372.5-201ENST00000623665 376 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 AC048347.1-201ENST00000624621 427 ntBASIC3.39□□□□□ -1.87
CLRN1P58418 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CLRN1P58418 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.38□□□□□ -1.87
CLRN1P58418 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.38□□□□□ -1.87
CLRN1P58418 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLRN1P58418 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CLRN1P58418 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.38□□□□□ -1.87
CLRN1P58418 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.38□□□□□ -1.87
CLRN1P58418 RNU6-942P-201ENST00000363002 107 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 Y_RNA.106-201ENST00000363189 100 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 Y_RNA.123-201ENST00000363338 102 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 RNU6-527P-201ENST00000363425 104 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 Y_RNA.193-201ENST00000363979 102 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 RNU6-505P-201ENST00000384427 107 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 Y_RNA.574-201ENST00000384766 95 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
CLRN1P58418 RNU6-700P-201ENST00000391043 107 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CLRN1P58418 RNU2-37P-201ENST00000410695 177 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.38□□□□□ -1.87
CLRN1P58418 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.38□□□□□ -1.87
CLRN1P58418 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.38□□□□□ -1.87
CLRN1P58418 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.38□□□□□ -1.87
CLRN1P58418 AC007389.2-201ENST00000434630 306 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CLRN1P58418 NUTF2P7-201ENST00000453086 375 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.38□□□□□ -1.87
CLRN1P58418 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 RPL23AP14-201ENST00000468281 468 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC084357.1-201ENST00000473404 255 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 RPS29P20-201ENST00000489592 171 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 RPL22P13-201ENST00000493291 347 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 RN7SL323P-201ENST00000494712 295 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 BTF3L4P4-201ENST00000506381 449 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 MRPS35P2-201ENST00000508242 191 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC006445.2-201ENST00000510061 472 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 RN7SKP209-201ENST00000516888 304 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC144568.1-201ENST00000520139 137 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC004817.2-201ENST00000561794 651 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC007224.1-201ENST00000564410 144 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AL360157.1-201ENST00000565962 87 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC006600.1-201ENST00000572529 153 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.38□□□□□ -1.87
CLRN1P58418 7SK.7-201ENST00000603504 247 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC016727.2-201ENST00000603988 621 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 HMGB1P50-201ENST00000605814 607 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AL138825.1-201ENST00000618587 192 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
CLRN1P58418 U4.1-201ENST00000620349 87 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.38□□□□□ -1.87
CLRN1P58418 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLRN1P58418 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.38□□□□□ -1.87
CLRN1P58418 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLRN1P58418 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CLRN1P58418 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CLRN1P58418 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CLRN1P58418 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.38□□□□□ -1.87
CLRN1P58418 AC007656.2-201ENST00000624902 4547 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 CUL1P1-201ENST00000509510 2425 ntBASIC3.38□□□□□ -1.87
CLRN1P58418 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.38□□□□□ -1.87
CLRN1P58418 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.37□□□□□ -1.87
CLRN1P58418 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CLRN1P58418 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLRN1P58418 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CLRN1P58418 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms