Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD3P31249 RNU1-103P-201ENST00000516502 125 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 Y_RNA.687-201ENST00000516558 91 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 MIR2114-201ENST00000516645 80 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 RNU6-1137P-201ENST00000517073 99 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.85□□□□□ -1.95
HOXD3P31249 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD3P31249 AC011890.2-201ENST00000613393 294 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 AP000553.6-201ENST00000641242 118 ntBASIC2.85□□□□□ -1.95
HOXD3P31249 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXD3P31249 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD3P31249 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD3P31249 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HOXD3P31249 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD3P31249 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD3P31249 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC2.84□□□□□ -1.95
HOXD3P31249 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD3P31249 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
HOXD3P31249 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC2.84□□□□□ -1.95
HOXD3P31249 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD3P31249 RNU6-1115P-201ENST00000362490 106 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 Y_RNA.28-201ENST00000362554 111 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 RNU6-884P-201ENST00000363889 107 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 RNU6-270P-201ENST00000364131 105 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 Y_RNA.463-201ENST00000384271 102 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 RNU6-658P-201ENST00000384606 106 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 SNORA75.6-201ENST00000391318 127 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 AL159987.2-201ENST00000432754 307 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXD3P31249 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC2.84□□□□□ -1.95
HOXD3P31249 RNA5SP310-201ENST00000459084 116 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 AC008571.1-201ENST00000467232 300 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 HMGN2P13-201ENST00000476476 274 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 FO393415.2-201ENST00000480085 343 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 RPS29P20-201ENST00000489592 171 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC2.84□□□□□ -1.95
HOXD3P31249 RNU6-470P-201ENST00000515954 104 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 RN7SKP209-201ENST00000516888 304 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 RNU6-703P-201ENST00000516946 107 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 RNU6-699P-201ENST00000517081 110 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD3P31249 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.84□□□□□ -1.95
HOXD3P31249 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXD3P31249 DNAJC8P1-201ENST00000554535 372 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC2.84□□□□□ -1.95
HOXD3P31249 AC008121.1-201ENST00000603244 268 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 MTND4LP5-201ENST00000605152 292 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 BRDTP1-201ENST00000605735 677 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 AC007485.1-201ENST00000616755 206 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
HOXD3P31249 MIR7975-201ENST00000619350 68 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.84□□□□□ -1.95
HOXD3P31249 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
HOXD3P31249 U2.21-201ENST00000637295 81 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 AL359693.1-201ENST00000614959 2407 ntBASIC2.84□□□□□ -1.95
HOXD3P31249 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.84□□□□□ -1.96
HOXD3P31249 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC2.84□□□□□ -1.96
HOXD3P31249 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
HOXD3P31249 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.83□□□□□ -1.96
HOXD3P31249 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD3P31249 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
HOXD3P31249 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD3P31249 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD3P31249 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXD3P31249 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.83□□□□□ -1.96
HOXD3P31249 ZNF807-201ENST00000328088 1707 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 RPL9P7-201ENST00000330965 580 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 Y_RNA.112-201ENST00000363250 102 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 RNA5SP50-201ENST00000363731 107 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXD3P31249 Y_RNA.496-201ENST00000384444 101 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 MIR490-201ENST00000384865 128 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 RNU6-293P-201ENST00000411259 106 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AC113618.1-201ENST00000416747 285 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AC099548.1-201ENST00000421443 426 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXD3P31249 BX276092.3-201ENST00000424182 230 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 USMG5P1-201ENST00000425964 177 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD3P31249 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXD3P31249 AP000907.1-201ENST00000428428 510 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AL513043.1-201ENST00000439124 535 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXD3P31249 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD3P31249 BX510359.1-201ENST00000456973 237 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 RPL9P9-202ENST00000466501 579 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXD3P31249 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD3P31249 AC022493.2-201ENST00000506122 481 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 Y_RNA.661-201ENST00000516003 99 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 RNU6-1183P-201ENST00000517054 60 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AC022634.1-201ENST00000520765 532 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD3P31249 AC008011.1-201ENST00000545989 227 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD3P31249 AC109446.1-201ENST00000566172 220 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 MIR5195-201ENST00000583555 115 ntBASIC2.83□□□□□ -1.96
HOXD3P31249 AL645944.1-201ENST00000603857 493 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms