Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SNORA31.21-201ENST00000517180 77 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 OR4P1P-201ENST00000530808 1136 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 AC109635.4-202ENST00000531666 412 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.55□□□□□ -1.84
COL3A1P02461 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.55□□□□□ -1.84
COL3A1P02461 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.55□□□□□ -1.84
COL3A1P02461 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.55□□□□□ -1.84
COL3A1P02461 AC092747.3-201ENST00000603769 301 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 AC062037.2-201ENST00000610137 73 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 AP001486.3-201ENST00000615334 372 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 AL669831.3-213ENST00000636676 183 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL3A1P02461 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL3A1P02461 AL138713.1-201ENST00000624026 2130 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL3A1P02461 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL3A1P02461 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.55□□□□□ -1.84
COL3A1P02461 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.54□□□□□ -1.84
COL3A1P02461 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
COL3A1P02461 MIR19A-201ENST00000384878 82 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL3A1P02461 PSMA6P3-201ENST00000428242 164 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 RPL36P19-201ENST00000430744 301 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.54□□□□□ -1.84
COL3A1P02461 SUMO1P3-201ENST00000439961 304 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC020550.1-201ENST00000447385 163 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.54□□□□□ -1.84
COL3A1P02461 RN7SL330P-201ENST00000469709 307 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.54□□□□□ -1.84
COL3A1P02461 RN7SL297P-201ENST00000483161 293 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC104564.1-201ENST00000493028 407 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.54□□□□□ -1.84
COL3A1P02461 AC093767.1-201ENST00000504523 156 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.54□□□□□ -1.84
COL3A1P02461 AC107222.1-201ENST00000510899 637 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.54□□□□□ -1.84
COL3A1P02461 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.54□□□□□ -1.84
COL3A1P02461 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.54□□□□□ -1.84
COL3A1P02461 COX6CP3-201ENST00000580869 223 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC012119.1-201ENST00000603184 222 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC011890.2-201ENST00000613393 294 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.54□□□□□ -1.84
COL3A1P02461 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL3A1P02461 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL3A1P02461 API5P2-201ENST00000397055 1498 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL3A1P02461 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL3A1P02461 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL3A1P02461 AC130650.2-201ENST00000618736 2403 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL3A1P02461 RNU6-1287P-201ENST00000362914 107 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 RNY1P14-201ENST00000384426 108 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 RNU6-1060P-201ENST00000384664 107 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC080125.1-201ENST00000414888 684 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 RPL7P10-201ENST00000417407 739 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.54□□□□□ -1.84
COL3A1P02461 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.54□□□□□ -1.84
COL3A1P02461 MTND2P29-201ENST00000438595 412 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.54□□□□□ -1.84
COL3A1P02461 RAC1P7-201ENST00000445367 377 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 RNU7-59P-201ENST00000459101 61 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.54□□□□□ -1.84
COL3A1P02461 RNA5SP320-201ENST00000516263 124 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 Y_RNA.721-201ENST00000517207 102 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 RN7SKP40-201ENST00000517211 242 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.54□□□□□ -1.84
COL3A1P02461 AC091544.4-201ENST00000555268 342 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.54□□□□□ -1.84
COL3A1P02461 U2.1-201ENST00000618978 145 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 AC092608.2-201ENST00000624427 218 ntBASIC3.54□□□□□ -1.84
COL3A1P02461 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.54□□□□□ -1.84
COL3A1P02461 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL3A1P02461 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL3A1P02461 CDC27P3-201ENST00000635418 1910 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL3A1P02461 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL3A1P02461 Y_RNA.493-201ENST00000384422 102 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 RNU6-328P-201ENST00000390887 106 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 MIR450B-201ENST00000401182 78 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 RNU2-22P-201ENST00000411266 212 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.53□□□□□ -1.84
COL3A1P02461 RAC1P6-201ENST00000423911 575 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.53□□□□□ -1.84
COL3A1P02461 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.53□□□□□ -1.84
COL3A1P02461 HMGB1P12-201ENST00000438594 598 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.53□□□□□ -1.84
COL3A1P02461 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.53□□□□□ -1.84
COL3A1P02461 AL162388.1-201ENST00000450912 352 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 AL162395.1-201ENST00000457882 422 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 KPNA2P1-201ENST00000458289 1591 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.53□□□□□ -1.84
COL3A1P02461 AC104057.1-201ENST00000515547 497 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.53□□□□□ -1.84
COL3A1P02461 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.53□□□□□ -1.84
COL3A1P02461 OR11H5P-201ENST00000554039 926 ntBASIC3.53□□□□□ -1.84
COL3A1P02461 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.53□□□□□ -1.84
COL3A1P02461 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.53□□□□□ -1.84
COL3A1P02461 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms