Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC083806.3-201ENST00000614016 455 ntBASIC3.8□□□□□ -1.8
CBX4O00257 MIR6134-201ENST00000617606 109 ntBASIC3.8□□□□□ -1.8
CBX4O00257 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.8□□□□□ -1.8
CBX4O00257 U6.105-201ENST00000637379 88 ntBASIC3.8□□□□□ -1.8
CBX4O00257 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.8□□□□□ -1.8
CBX4O00257 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CBX4O00257 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
CBX4O00257 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CBX4O00257 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.8□□□□□ -1.8
CBX4O00257 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
CBX4O00257 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.8□□□□□ -1.8
CBX4O00257 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.8□□□□□ -1.8
CBX4O00257 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CBX4O00257 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CBX4O00257 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CBX4O00257 U8.8-201ENST00000365399 135 ntBASIC3.79□□□□□ -1.8
CBX4O00257 Y_RNA.463-201ENST00000384271 102 ntBASIC3.79□□□□□ -1.8
CBX4O00257 RNU1-89P-201ENST00000384592 164 ntBASIC3.79□□□□□ -1.8
CBX4O00257 MIR34B-201ENST00000385076 84 ntBASIC3.79□□□□□ -1.8
CBX4O00257 AL591034.2-201ENST00000402839 359 ntBASIC3.79□□□□□ -1.8
CBX4O00257 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.79□□□□□ -1.8
CBX4O00257 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.79□□□□□ -1.8
CBX4O00257 snoU13.28-201ENST00000459235 104 ntBASIC3.79□□□□□ -1.8
CBX4O00257 AC068781.1-201ENST00000488231 618 ntBASIC3.79□□□□□ -1.8
CBX4O00257 SNORA43.2-201ENST00000516652 128 ntBASIC3.79□□□□□ -1.8
CBX4O00257 SCARNA13-201ENST00000516672 275 ntBASIC3.79□□□□□ -1.8
CBX4O00257 RNU6-612P-201ENST00000516909 102 ntBASIC3.79□□□□□ -1.8
CBX4O00257 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.79□□□□□ -1.8
CBX4O00257 AC008011.1-201ENST00000545989 227 ntBASIC3.79□□□□□ -1.8
CBX4O00257 BNIP3P16-201ENST00000589779 534 ntBASIC3.79□□□□□ -1.8
CBX4O00257 RNU1-30P-201ENST00000606575 163 ntBASIC3.79□□□□□ -1.8
CBX4O00257 AL355802.3-201ENST00000607571 545 ntBASIC3.79□□□□□ -1.8
CBX4O00257 MIR8076-201ENST00000611401 83 ntBASIC3.79□□□□□ -1.8
CBX4O00257 uc_338.32-201ENST00000615087 172 ntBASIC3.79□□□□□ -1.8
CBX4O00257 AC068831.7-201ENST00000616954 363 ntBASIC3.79□□□□□ -1.8
CBX4O00257 AC138627.2-201ENST00000624202 601 ntBASIC3.79□□□□□ -1.8
CBX4O00257 AL732372.2-225ENST00000642124 456 ntBASIC3.79□□□□□ -1.8
CBX4O00257 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CBX4O00257 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.79□□□□□ -1.8
CBX4O00257 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CBX4O00257 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CBX4O00257 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CBX4O00257 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.79□□□□□ -1.8
CBX4O00257 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.78□□□□□ -1.8
CBX4O00257 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CBX4O00257 MTND5P30-201ENST00000452896 1731 ntBASIC3.78□□□□□ -1.8
CBX4O00257 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.78□□□□□ -1.8
CBX4O00257 ADAM3A-203ENST00000461344 2157 ntBASIC3.78□□□□□ -1.8
CBX4O00257 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.78□□□□□ -1.8
CBX4O00257 Y_RNA.5-201ENST00000362334 102 ntBASIC3.78□□□□□ -1.8
CBX4O00257 RNU6-527P-201ENST00000363425 104 ntBASIC3.78□□□□□ -1.8
CBX4O00257 Y_RNA.252-201ENST00000364556 101 ntBASIC3.78□□□□□ -1.8
CBX4O00257 Y_RNA.428-201ENST00000384078 102 ntBASIC3.78□□□□□ -1.8
CBX4O00257 RNU6-1160P-201ENST00000384546 104 ntBASIC3.78□□□□□ -1.8
CBX4O00257 RNVU1-14-201ENST00000384770 164 ntBASIC3.78□□□□□ -1.8
CBX4O00257 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.78□□□□□ -1.8
CBX4O00257 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.78□□□□□ -1.8
CBX4O00257 AC125238.1-201ENST00000448842 249 ntBASIC3.78□□□□□ -1.8
CBX4O00257 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 HMGN2P13-201ENST00000476476 274 ntBASIC3.78□□□□□ -1.8
CBX4O00257 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.78□□□□□ -1.8
CBX4O00257 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.78□□□□□ -1.8
CBX4O00257 AC020895.1-201ENST00000595362 272 ntBASIC3.78□□□□□ -1.8
CBX4O00257 AC005046.1-201ENST00000608515 625 ntBASIC3.78□□□□□ -1.8
CBX4O00257 AL138880.2-201ENST00000616214 239 ntBASIC3.78□□□□□ -1.8
CBX4O00257 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.78□□□□□ -1.8
CBX4O00257 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
CBX4O00257 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.77□□□□□ -1.81
CBX4O00257 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.77□□□□□ -1.81
CBX4O00257 AC032011.1-201ENST00000611703 1549 ntBASIC3.77□□□□□ -1.81
CBX4O00257 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CBX4O00257 RNA5SP295-201ENST00000362655 121 ntBASIC3.77□□□□□ -1.81
CBX4O00257 RNU6-336P-201ENST00000364891 107 ntBASIC3.77□□□□□ -1.81
CBX4O00257 RPS29P13-201ENST00000402041 169 ntBASIC3.77□□□□□ -1.81
CBX4O00257 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.77□□□□□ -1.81
CBX4O00257 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.77□□□□□ -1.81
CBX4O00257 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.77□□□□□ -1.81
CBX4O00257 AC018865.2-201ENST00000423631 129 ntBASIC3.77□□□□□ -1.81
CBX4O00257 BX276092.3-201ENST00000424182 230 ntBASIC3.77□□□□□ -1.81
CBX4O00257 AL591043.1-201ENST00000432461 424 ntBASIC3.77□□□□□ -1.81
CBX4O00257 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CBX4O00257 SSXP4-201ENST00000451349 245 ntBASIC3.77□□□□□ -1.81
CBX4O00257 RPL23AP14-201ENST00000468281 468 ntBASIC3.77□□□□□ -1.81
CBX4O00257 RN7SL293P-201ENST00000481765 281 ntBASIC3.77□□□□□ -1.81
CBX4O00257 RPS29P20-201ENST00000489592 171 ntBASIC3.77□□□□□ -1.81
CBX4O00257 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.77□□□□□ -1.81
CBX4O00257 RNU6-699P-201ENST00000517081 110 ntBASIC3.77□□□□□ -1.81
CBX4O00257 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.77□□□□□ -1.81
CBX4O00257 AL451007.1-201ENST00000595491 289 ntBASIC3.77□□□□□ -1.81
CBX4O00257 VN1R107P-201ENST00000601784 209 ntBASIC3.77□□□□□ -1.81
CBX4O00257 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.77□□□□□ -1.81
CBX4O00257 U3.45-201ENST00000607547 219 ntBASIC3.77□□□□□ -1.81
CBX4O00257 AC012531.5-201ENST00000611375 151 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms