Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
FOXA2Q9Y261 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC092593.1-201ENST00000515413 1815 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 SNORA67.1-201ENST00000364749 141 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 RNU6-487P-201ENST00000365430 104 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 SNORA75-201ENST00000384158 137 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 RN7SKP158-201ENST00000410453 326 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 RNU6-607P-201ENST00000411283 108 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 EEF1A1P41-201ENST00000414667 207 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AL096701.2-201ENST00000416920 238 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 MTCO2P34-201ENST00000421994 607 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 MTCO2P16-201ENST00000436962 677 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 MTCO1P19-201ENST00000443487 500 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 OFD1P4Y-201ENST00000455273 1179 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC003982.1-202ENST00000469928 248 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC006362.1-201ENST00000567392 174 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC010620.1-201ENST00000601088 1102 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AL121917.1-203ENST00000605534 577 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 RMST_4.1-201ENST00000616886 107 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 MIR6733-201ENST00000635723 61 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 AC090582.1-201ENST00000636321 199 ntBASIC2.27□□□□□ -2.05
FOXA2Q9Y261 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA2Q9Y261 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 RNU6-1010P-201ENST00000362757 107 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 RNU5E-7P-201ENST00000365290 117 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 RNU6-606P-201ENST00000384721 111 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 MIR524-201ENST00000385242 87 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 SNORA48.2-201ENST00000390926 124 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 MTATP6P18-201ENST00000417994 673 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 AL161788.1-201ENST00000441805 169 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 AC011825.1-201ENST00000484967 388 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 RPL37P25-201ENST00000507308 276 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 BNIP3P6-201ENST00000549284 499 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 LRRC37A5P-203ENST00000580181 585 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 AC005000.2-201ENST00000605468 310 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 uc_338.15-201ENST00000615470 191 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 AC009233.1-201ENST00000616477 371 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 U4atac.1-201ENST00000618345 95 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 AC008121.3-201ENST00000618726 433 ntBASIC2.26□□□□□ -2.05
FOXA2Q9Y261 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
FOXA2Q9Y261 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RNU6-1120P-201ENST00000362988 108 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RNU1-91P-201ENST00000364746 163 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 SNORA44-201ENST00000384584 132 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 MIR592-201ENST00000384959 97 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 UBA52P6-201ENST00000399822 382 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RPS4XP7-201ENST00000406274 780 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 Z92545.1-201ENST00000411782 234 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 OR9R1P-201ENST00000412200 877 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AC074117.2-201ENST00000417130 397 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AL360221.1-201ENST00000445989 335 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AC117503.1-201ENST00000472241 394 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RPS27AP9-201ENST00000477681 438 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RPL9P33-201ENST00000484311 566 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RNU2-53P-201ENST00000516257 147 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 SCARNA13-201ENST00000516672 275 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 ELOCP31-201ENST00000540463 467 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA2Q9Y261 ZNF861P-201ENST00000588126 639 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RSL24D1P11-201ENST00000591045 491 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RPL30P11-203ENST00000598995 310 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AC025449.1-201ENST00000603896 529 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 SNORD14A-201ENST00000606526 91 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 RN7SKP299-201ENST00000606679 301 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AC005046.1-201ENST00000608515 625 ntBASIC2.25□□□□□ -2.05
FOXA2Q9Y261 AC135507.2-201ENST00000612443 309 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms