Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RNU6-486P-201ENST00000363116 107 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RNU6-1097P-201ENST00000363586 107 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RNU6-1072P-201ENST00000384703 107 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RNU6-443P-201ENST00000384780 107 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 SNORA3.2-201ENST00000408221 125 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RNA5SP181-201ENST00000410246 98 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 MTCO3P30-201ENST00000426425 670 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 CALM2P2-201ENST00000428512 440 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 AL627311.1-201ENST00000431514 115 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RNU6-956P-201ENST00000458868 103 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RNU7-26P-201ENST00000458980 63 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RPL23AP49-201ENST00000492925 468 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 AC008716.1-201ENST00000511084 513 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 OR5AQ1P-201ENST00000527596 927 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 AC010186.2-204ENST00000537668 439 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 AC069294.1-201ENST00000608397 350 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 AC010297.1-201ENST00000623948 149 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 U6.114-201ENST00000636407 96 ntBASIC2.3□□□□□ -2.04
LHX3Q9UBR4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
LHX3Q9UBR4 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 Y_RNA.367-201ENST00000365544 101 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 RNU6-108P-201ENST00000365558 107 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 Y_RNA.576-201ENST00000384781 102 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 U3.37-201ENST00000408528 213 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 U6atac.2-201ENST00000408644 118 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AL031779.1-201ENST00000415663 330 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC016831.2-201ENST00000417179 352 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 PIGFP2-201ENST00000421400 651 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 MTCYBP5-201ENST00000423752 1135 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 RPL30P4-201ENST00000429309 333 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 MTCO2P16-201ENST00000436962 677 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 KATNBL1P3-201ENST00000443475 909 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 NDUFB1P2-201ENST00000449477 176 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC080013.2-201ENST00000460866 323 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 RPL36AP48-201ENST00000485521 314 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC117522.2-201ENST00000510049 657 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC010486.1-201ENST00000511793 424 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 RNU6-685P-201ENST00000517088 95 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 OR5AL2P-201ENST00000532185 920 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AL356057.1-201ENST00000533798 831 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC078814.3-201ENST00000553036 491 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC012213.3-201ENST00000577199 777 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AL138889.2-201ENST00000603883 242 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AL670379.10-201ENST00000604330 253 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 Z84480.1-201ENST00000605131 311 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AL670379.9-201ENST00000605428 253 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC087752.4-201ENST00000605911 462 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC006566.1-201ENST00000608943 513 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC092656.1-203ENST00000624134 423 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC138627.2-201ENST00000624202 601 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 AC064859.1-201ENST00000624741 174 ntBASIC2.29□□□□□ -2.04
LHX3Q9UBR4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
LHX3Q9UBR4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC138393.1-203ENST00000327086 343 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 SNORD3E-201ENST00000362899 217 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 SNORD115-7-201ENST00000365306 82 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 RNU6-282P-201ENST00000365357 103 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 RNU6-348P-201ENST00000384386 107 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 RNU6-1179P-201ENST00000384667 107 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 MIR221-201ENST00000385135 110 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 FTH1P15-201ENST00000406984 280 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 Z98742.3-201ENST00000418637 326 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.28□□□□□ -2.04
LHX3Q9UBR4 ARL2BPP4-201ENST00000506854 471 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC104806.1-201ENST00000508720 308 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 MTCO3P28-201ENST00000513351 515 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 RNU5B-3P-201ENST00000516601 115 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 AC025678.1-201ENST00000567861 338 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 MIR5571-201ENST00000577998 113 ntBASIC2.28□□□□□ -2.04
LHX3Q9UBR4 MIR5692A1-201ENST00000580523 69 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms