Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SSXP4-201ENST00000451349 245 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 HMGN2P7-201ENST00000456186 273 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 RN7SL323P-201ENST00000494712 295 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 AC026402.1-201ENST00000513642 170 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 SNORA70.14-201ENST00000516205 110 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 MIR5685-201ENST00000579080 79 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 MIR3199-2-201ENST00000636243 86 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 CDC27P3-201ENST00000635418 1910 ntBASIC3.85□□□□□ -1.79
TRIM39Q9HCM9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 RNU6-105P-201ENST00000363909 104 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 BTF3L4P2-201ENST00000392798 346 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 Z98941.1-201ENST00000407764 100 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 AL159169.1-201ENST00000421119 127 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 BPY2DP-201ENST00000422208 265 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 HMGN2P10-201ENST00000448085 265 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 AP002884.2-201ENST00000471647 395 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 HMGN2P13-201ENST00000476476 274 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 RPL17P19-201ENST00000489069 552 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 SNORA25.10-201ENST00000515926 124 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 RNU6-699P-201ENST00000517081 110 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 AC020895.1-201ENST00000595362 272 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 AL732372.2-225ENST00000642124 456 ntBASIC3.84□□□□□ -1.79
TRIM39Q9HCM9 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
TRIM39Q9HCM9 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.84□□□□□ -1.8
TRIM39Q9HCM9 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 RNU6-858P-201ENST00000362436 107 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 RNU1-100P-201ENST00000365255 165 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 RNU6-738P-201ENST00000384531 106 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 MIR199A2-201ENST00000385289 110 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 MTND3P9-201ENST00000429526 346 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 CEACAMP4-201ENST00000457676 421 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 RPS29P20-201ENST00000489592 171 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 NDUFB4P9-201ENST00000511646 388 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 AC010265.1-201ENST00000513509 211 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 RNA5SP143-201ENST00000516936 115 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 SNORA31.18-201ENST00000517043 134 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 AP000867.2-201ENST00000532468 320 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 AC021739.1-201ENST00000559631 174 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 SUB1P3-201ENST00000564581 315 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 AL162730.1-201ENST00000605734 292 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 TNPO1P3-201ENST00000436471 2662 ntBASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
TRIM39Q9HCM9 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 IPO8P1-201ENST00000455509 3109 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 MTND5P9-201ENST00000503854 1755 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 Y_RNA.145-201ENST00000363527 102 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 RNU1-115P-201ENST00000365329 160 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 MIR30B-201ENST00000384850 88 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 RNA5SP38-201ENST00000410750 119 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 MCFD2P1-201ENST00000417812 300 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC008267.5-201ENST00000424928 265 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC026726.1-201ENST00000512859 601 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 RNA5SP164-201ENST00000516533 110 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC006157.1-201ENST00000611750 366 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 AC138627.2-201ENST00000624202 601 ntBASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.82□□□□□ -1.8
TRIM39Q9HCM9 ZNF299P-201ENST00000406845 1804 ntBASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.81□□□□□ -1.8
TRIM39Q9HCM9 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms