Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC011979.2-201ENST00000527568 352 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AL157871.3-201ENST00000557231 293 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC026271.5-201ENST00000577873 130 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 MIR4307-201ENST00000582802 84 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 MIR548AB-201ENST00000584917 84 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 NBR2-204ENST00000587322 63 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AC064872.1-201ENST00000604823 1072 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 AL162373.1-201ENST00000620433 407 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 CTSLP2-204ENST00000629029 392 ntBASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.24□□□□□ -2.05
ZNF540Q8NDQ6 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 SNORD62.1-201ENST00000362541 86 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 Y_RNA.33-201ENST00000362591 102 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 SNORD114-19-201ENST00000363072 75 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 Y_RNA.201-201ENST00000364052 96 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-395P-201ENST00000365662 106 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 Y_RNA.534-201ENST00000384599 112 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 SNORA46.1-201ENST00000391069 153 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-1025P-201ENST00000410629 104 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 HMGB3P12-201ENST00000438745 556 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 DNAJC19P4-201ENST00000440115 345 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 MTCO1P19-201ENST00000443487 500 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-1092P-201ENST00000516955 87 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 OR5AQ1P-201ENST00000527596 927 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC243972.3-201ENST00000539655 198 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC234778.2-201ENST00000566241 354 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 MIR5697-201ENST00000578045 78 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 MIR1273C-201ENST00000578669 77 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC119751.7-201ENST00000600494 245 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC005034.5-201ENST00000604219 466 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC022893.3-201ENST00000607665 437 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC025034.2-201ENST00000623264 286 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AC091932.3-201ENST00000624223 323 ntBASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
ZNF540Q8NDQ6 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 Y_RNA.46-201ENST00000362695 102 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 RNU1-72P-201ENST00000362976 153 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-501P-201ENST00000364072 100 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 RNU4-75P-201ENST00000364621 146 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 Y_RNA.436-201ENST00000384097 102 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-190P-201ENST00000384154 102 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 SNORA75-201ENST00000384158 137 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 Y_RNA.553-201ENST00000384670 102 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 SNORD116-4-201ENST00000384733 96 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 MIR518D-201ENST00000385014 87 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 RN7SKP142-201ENST00000411236 328 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 MTND1P30-201ENST00000441241 901 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AL022238.1-201ENST00000442557 355 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 USP9YP29-201ENST00000445112 563 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 MTCO1P42-201ENST00000457379 726 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC093899.1-201ENST00000457984 376 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC091435.1-201ENST00000505442 584 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 Y_RNA.695-201ENST00000516715 107 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-914P-201ENST00000516749 109 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-1003P-201ENST00000517099 105 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-201P-201ENST00000517100 61 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC078814.3-201ENST00000553036 491 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 MIR3945-201ENST00000581853 98 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC103987.3-201ENST00000582071 292 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AL031274.2-201ENST00000599419 203 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC146944.4-201ENST00000602697 718 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AC121334.2-201ENST00000605387 271 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AL627230.6-201ENST00000611129 280 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 AL590808.1-201ENST00000618696 141 ntBASIC2.22□□□□□ -2.05
ZNF540Q8NDQ6 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms