Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AL133412.1-201ENST00000380194 2992 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-874P-201ENST00000362390 105 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 RNA5SP104-201ENST00000410989 118 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 HMGB1P9-201ENST00000429856 646 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 RPS24P13-201ENST00000442520 397 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 RPS29P31-201ENST00000446147 164 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 RPS15AP34-201ENST00000487776 387 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AC018437.1-201ENST00000492214 406 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AC114801.2-201ENST00000503825 781 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AC107222.1-201ENST00000510899 637 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-408P-201ENST00000515910 100 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-914P-201ENST00000516749 109 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 SNORA31.22-201ENST00000517204 135 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 OR1M4P-201ENST00000589199 287 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AL591516.1-201ENST00000611326 274 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AL138825.1-201ENST00000618587 192 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 MIR8062-201ENST00000621515 85 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AC006386.2-201ENST00000624491 75 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 AC012005.1-201ENST00000624575 75 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 MTND5P7-201ENST00000413558 1798 ntBASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
USHBP1Q8N6Y0 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.210-201ENST00000364161 110 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.577-201ENST00000384794 101 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-882P-201ENST00000391025 103 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 UBA52P6-201ENST00000399822 382 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-174P-201ENST00000410406 106 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 AL356968.1-201ENST00000416622 474 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 AL158071.1-201ENST00000430315 461 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 RPS15AP10-201ENST00000432472 382 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 DYNLT3P2-201ENST00000442517 295 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 AL583843.1-201ENST00000456070 346 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 RPL23AP31-201ENST00000456160 467 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 MTND3P25-201ENST00000509243 135 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 FTH1P9-201ENST00000513251 355 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 SNORA40.14-201ENST00000516543 86 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 AC104576.1-201ENST00000524225 88 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 SNRPGP16-201ENST00000533275 226 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 MIR6852-201ENST00000621699 66 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 AC068647.1-201ENST00000489539 2265 ntBASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
USHBP1Q8N6Y0 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 MFSD8-233ENST00000641482 4860 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.106-201ENST00000363189 100 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-1279P-201ENST00000383917 103 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 RPS15AP6-201ENST00000420703 385 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 BX276092.3-201ENST00000424182 230 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AC006028.1-201ENST00000438379 402 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AL031274.1-201ENST00000450334 232 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AC108860.1-201ENST00000484521 383 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AC105758.1-201ENST00000506038 399 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 RNU4-60P-201ENST00000517239 135 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 SCARNA15.3-201ENST00000626315 122 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 SCARNA4.1-201ENST00000628597 123 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AC018555.1-201ENST00000567548 1980 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 AC005183.1-201ENST00000603687 1979 ntBASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
USHBP1Q8N6Y0 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 RNU1-70P-201ENST00000362618 164 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.288-201ENST00000364854 92 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 RNA5SP235-201ENST00000365411 114 ntBASIC4.42□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.396-201ENST00000383949 103 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms