Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 SCARNA10-201ENST00000459255 330 ntBASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 RNU6-625P-201ENST00000459412 107 ntBASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 RN7SL303P-201ENST00000469773 251 ntBASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 AC026402.1-201ENST00000513642 170 ntBASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 Y_RNA.692-201ENST00000516627 105 ntBASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 AC134698.5-201ENST00000519444 336 ntBASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 RPL23AP53-201ENST00000521854 457 ntBASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
NPAS3Q8IXF0 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 AC125257.1-201ENST00000560400 2930 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 Y_RNA.114-201ENST00000363265 113 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 RNY1P7-201ENST00000384743 110 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 SNORA26.5-201ENST00000391215 123 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 SNORA57.1-201ENST00000391227 145 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 AL592291.1-201ENST00000403830 352 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 RPL39P29-201ENST00000447779 157 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 snoU109.4-201ENST00000458953 143 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 AC007224.1-201ENST00000564410 144 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 MIR1254-2-201ENST00000579553 63 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 MIR4472-2-201ENST00000582069 67 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 AC114781.5-201ENST00000615297 108 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 AC013791.1-201ENST00000616619 62 ntBASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.8□□□□□ -1.64
NPAS3Q8IXF0 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 U8.1-201ENST00000362843 134 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 RNU6-801P-201ENST00000364087 105 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 Y_RNA.221-201ENST00000364248 96 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 MIR488-201ENST00000365739 83 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 RNU6-1336P-201ENST00000383886 109 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 RNU6-756P-201ENST00000383997 107 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 RNU6-339P-201ENST00000384310 107 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 MIR29B2-201ENST00000385055 81 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 MIR616-201ENST00000385293 97 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 RNU6-159P-201ENST00000391080 106 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 RPS3AP1-201ENST00000413190 320 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 RPS29P17-201ENST00000430795 166 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 ARF4P1-201ENST00000605447 541 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 MIR6864-201ENST00000617935 70 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 AL445567.2-201ENST00000618935 498 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 AC024581.2-201ENST00000619986 252 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 AL672167.1-204ENST00000641875 3017 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 SALL4P2-201ENST00000423288 2910 ntBASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.79□□□□□ -1.64
NPAS3Q8IXF0 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 AL136164.3-201ENST00000624429 3978 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 MIR494-201ENST00000349529 81 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 RNA5SP28-201ENST00000363841 119 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 RNU6-1048P-201ENST00000364054 107 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 RNU6-142P-201ENST00000384019 107 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 RNU6-972P-201ENST00000391208 107 ntBASIC4.78□□□□□ -1.64
NPAS3Q8IXF0 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms