Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 RNU6-38P-201ENST00000384085 107 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 SNORA16.2-201ENST00000390991 127 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 SNORD70.1-201ENST00000391007 85 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 RNA5SP118-201ENST00000410385 109 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 RNU6-1068P-201ENST00000410958 103 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 Y_RNA.623-201ENST00000411128 95 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 CST9LP2-201ENST00000437612 320 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 RNU6-333P-201ENST00000459117 107 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AC008413.1-201ENST00000511864 177 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AC022634.1-201ENST00000520765 532 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 NUTF2P8-201ENST00000604593 363 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 MTND4LP5-201ENST00000605152 292 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 ATP1B3P1-201ENST00000605365 821 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 AC068944.2-201ENST00000610373 403 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 U6.99-201ENST00000637524 83 ntBASIC2.98□□□□□ -1.93
COL28A1Q2UY09 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL28A1Q2UY09 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AC093831.2-201ENST00000624393 3427 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 SNORD14B-201ENST00000364533 90 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 Z98749.2-208ENST00000381646 500 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 RNU6-658P-201ENST00000384606 106 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 RNU6-1179P-201ENST00000384667 107 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 SNORD37.1-201ENST00000390968 65 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 RNA5SP229-201ENST00000410809 99 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 TOMM20P4-201ENST00000427861 435 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 USP9YP28-201ENST00000435142 589 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AC011005.2-201ENST00000487324 359 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 RPS29P20-201ENST00000489592 171 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 CCDC34P1-201ENST00000507441 517 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 MIR6134-201ENST00000617606 109 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 AP003400.5-201ENST00000624827 617 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 OR4G1P-203ENST00000641984 1631 ntBASIC2.97□□□□□ -1.93
COL28A1Q2UY09 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
COL28A1Q2UY09 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 SNORD3E-201ENST00000362899 217 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 Y_RNA.231-201ENST00000364358 102 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 Y_RNA.295-201ENST00000364918 102 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 RNU4-20P-201ENST00000365601 151 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 RNU6-877P-201ENST00000383868 107 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 SNORA7.4-201ENST00000384249 137 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 Y_RNA.480-201ENST00000384364 102 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 RNU2-3P-201ENST00000410144 191 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AL592148.1-201ENST00000413568 445 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AC007560.1-201ENST00000426912 237 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 HMGN2P10-201ENST00000448085 265 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 MTND3P16-201ENST00000452205 344 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AL583843.1-201ENST00000456070 346 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 RNU7-167P-201ENST00000459160 62 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AC074344.1-201ENST00000512823 224 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 MIR892C-201ENST00000516410 77 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 MIR5583-1-201ENST00000580941 59 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AC012119.1-201ENST00000603184 222 ntBASIC2.96□□□□□ -1.94
COL28A1Q2UY09 AC002553.4-201ENST00000616896 331 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms