Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC005921.1-201ENST00000510589 286 ntBASIC4.01□□□□□ -1.77
RNF4P78317 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.01□□□□□ -1.77
RNF4P78317 AC120057.2-201ENST00000571520 271 ntBASIC4.01□□□□□ -1.77
RNF4P78317 MIR3138-201ENST00000585238 82 ntBASIC4.01□□□□□ -1.77
RNF4P78317 IPO5P1-202ENST00000600039 287 ntBASIC4.01□□□□□ -1.77
RNF4P78317 Y_RNA.772-201ENST00000606692 102 ntBASIC4.01□□□□□ -1.77
RNF4P78317 AC083809.1-201ENST00000615051 472 ntBASIC4.01□□□□□ -1.77
RNF4P78317 AC240442.1-201ENST00000616055 283 ntBASIC4.01□□□□□ -1.77
RNF4P78317 AL450472.1-202ENST00000637286 180 ntBASIC4.01□□□□□ -1.77
RNF4P78317 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.01□□□□□ -1.77
RNF4P78317 LINC02555-201ENST00000563933 1951 ntBASIC4.01□□□□□ -1.77
RNF4P78317 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
RNF4P78317 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.01□□□□□ -1.77
RNF4P78317 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
RNF4P78317 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
RNF4P78317 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.01□□□□□ -1.77
RNF4P78317 AP001486.2-201ENST00000561652 5113 ntBASIC4.01□□□□□ -1.77
RNF4P78317 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4□□□□□ -1.77
RNF4P78317 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC4□□□□□ -1.77
RNF4P78317 USP8P1-201ENST00000494673 3183 ntBASIC4□□□□□ -1.77
RNF4P78317 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
RNF4P78317 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
RNF4P78317 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
RNF4P78317 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
RNF4P78317 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4□□□□□ -1.77
RNF4P78317 RNU6-50P-201ENST00000362356 103 ntBASIC4□□□□□ -1.77
RNF4P78317 RNU6-1301P-201ENST00000362724 104 ntBASIC4□□□□□ -1.77
RNF4P78317 Y_RNA.117-201ENST00000363294 101 ntBASIC4□□□□□ -1.77
RNF4P78317 RNU1-20P-201ENST00000363314 162 ntBASIC4□□□□□ -1.77
RNF4P78317 RNA5SP189-201ENST00000364920 115 ntBASIC4□□□□□ -1.77
RNF4P78317 RNU6-926P-201ENST00000384075 107 ntBASIC4□□□□□ -1.77
RNF4P78317 MIR32-201ENST00000384965 70 ntBASIC4□□□□□ -1.77
RNF4P78317 SNORD78.2-201ENST00000391076 69 ntBASIC4□□□□□ -1.77
RNF4P78317 HDGFP1-201ENST00000405943 252 ntBASIC4□□□□□ -1.77
RNF4P78317 AL603910.2-201ENST00000407268 136 ntBASIC4□□□□□ -1.77
RNF4P78317 RNA5SP36-201ENST00000410197 133 ntBASIC4□□□□□ -1.77
RNF4P78317 MIR1911-201ENST00000410783 80 ntBASIC4□□□□□ -1.77
RNF4P78317 RN7SKP167-201ENST00000411047 285 ntBASIC4□□□□□ -1.77
RNF4P78317 RPL23AP26-201ENST00000412728 464 ntBASIC4□□□□□ -1.77
RNF4P78317 RPL26P27-201ENST00000414397 437 ntBASIC4□□□□□ -1.77
RNF4P78317 AL157831.1-201ENST00000426134 473 ntBASIC4□□□□□ -1.77
RNF4P78317 AC011742.1-201ENST00000431448 434 ntBASIC4□□□□□ -1.77
RNF4P78317 RPL37P4-201ENST00000448908 268 ntBASIC4□□□□□ -1.77
RNF4P78317 MTATP6P7-201ENST00000453315 681 ntBASIC4□□□□□ -1.77
RNF4P78317 AC006026.2-201ENST00000457376 180 ntBASIC4□□□□□ -1.77
RNF4P78317 RPL23AP14-201ENST00000468281 468 ntBASIC4□□□□□ -1.77
RNF4P78317 RPS26P21-201ENST00000475397 348 ntBASIC4□□□□□ -1.77
RNF4P78317 AC091167.1-201ENST00000492017 396 ntBASIC4□□□□□ -1.77
RNF4P78317 AF186996.7-201ENST00000492781 209 ntBASIC4□□□□□ -1.77
RNF4P78317 AC025445.1-201ENST00000502728 300 ntBASIC4□□□□□ -1.77
RNF4P78317 PARP4P3-201ENST00000510265 317 ntBASIC4□□□□□ -1.77
RNF4P78317 RNA5SP309-201ENST00000516670 106 ntBASIC4□□□□□ -1.77
RNF4P78317 MIR2355-201ENST00000517199 87 ntBASIC4□□□□□ -1.77
RNF4P78317 MIR4659A-201ENST00000580269 81 ntBASIC4□□□□□ -1.77
RNF4P78317 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4□□□□□ -1.77
RNF4P78317 AC073657.2-201ENST00000605661 303 ntBASIC4□□□□□ -1.77
RNF4P78317 RPL23AP88-201ENST00000605759 454 ntBASIC4□□□□□ -1.77
RNF4P78317 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4□□□□□ -1.77
RNF4P78317 MIR6830-201ENST00000636015 70 ntBASIC4□□□□□ -1.77
RNF4P78317 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
RNF4P78317 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
RNF4P78317 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4□□□□□ -1.77
RNF4P78317 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
RNF4P78317 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.99□□□□□ -1.77
RNF4P78317 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
RNF4P78317 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
RNF4P78317 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC3.99□□□□□ -1.77
RNF4P78317 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
RNF4P78317 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
RNF4P78317 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.99□□□□□ -1.77
RNF4P78317 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
RNF4P78317 MIR335-201ENST00000362173 94 ntBASIC3.99□□□□□ -1.77
RNF4P78317 Y_RNA.65-201ENST00000362846 100 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RNU6-937P-201ENST00000384325 106 ntBASIC3.99□□□□□ -1.77
RNF4P78317 Y_RNA.541-201ENST00000384640 113 ntBASIC3.99□□□□□ -1.77
RNF4P78317 UBA52P6-201ENST00000399822 382 ntBASIC3.99□□□□□ -1.77
RNF4P78317 MRPL35P1-201ENST00000404272 572 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RNU2-14P-201ENST00000411053 191 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RNU6-1245P-201ENST00000411130 106 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RAB9AP3-201ENST00000412737 573 ntBASIC3.99□□□□□ -1.77
RNF4P78317 YPEL5P1-201ENST00000419731 367 ntBASIC3.99□□□□□ -1.77
RNF4P78317 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.99□□□□□ -1.77
RNF4P78317 RAB9AP1-201ENST00000449393 573 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RN7SL385P-201ENST00000468873 276 ntBASIC3.99□□□□□ -1.77
RNF4P78317 SNRPGP7-201ENST00000469016 106 ntBASIC3.99□□□□□ -1.77
RNF4P78317 AC010618.1-201ENST00000469924 477 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RN7SL41P-201ENST00000476144 297 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RN7SL691P-201ENST00000494487 301 ntBASIC3.99□□□□□ -1.77
RNF4P78317 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.99□□□□□ -1.77
RNF4P78317 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.99□□□□□ -1.77
RNF4P78317 RN7SKP122-201ENST00000515923 296 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RNU6-1338P-201ENST00000516328 91 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RNU6-1012P-201ENST00000516606 109 ntBASIC3.99□□□□□ -1.77
RNF4P78317 RNU6-1282P-201ENST00000516735 96 ntBASIC3.99□□□□□ -1.77
RNF4P78317 SCARNA24.2-201ENST00000516968 130 ntBASIC3.99□□□□□ -1.77
RNF4P78317 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.99□□□□□ -1.77
RNF4P78317 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.99□□□□□ -1.77
RNF4P78317 MIR3939-201ENST00000582614 106 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 142.6 ms