Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SNORA16.2-201ENST00000390991 127 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 RNU6-332P-201ENST00000391193 108 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AL606923.1-201ENST00000406616 190 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 RPL19P1-201ENST00000411635 428 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AC138393.2-201ENST00000414742 246 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AL139413.1-201ENST00000421309 217 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.12□□□□□ -1.91
HDAC4P56524 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.12□□□□□ -1.91
HDAC4P56524 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC3.12□□□□□ -1.91
HDAC4P56524 AL714022.1-201ENST00000439897 151 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 MTCO3P18-201ENST00000440206 761 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AL360271.2-201ENST00000447710 161 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 SCARNA18-201ENST00000459004 134 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 RPL21P41-201ENST00000459863 264 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 S100A11P2-201ENST00000467589 312 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 RPL23AP11-201ENST00000475260 469 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 MTCO2P30-201ENST00000503662 364 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HDAC4P56524 RNU6-1038P-201ENST00000516516 104 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.12□□□□□ -1.91
HDAC4P56524 AC118273.2-201ENST00000532092 465 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 HSPE1P20-201ENST00000538133 289 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AC078814.3-201ENST00000553036 491 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 DUSP12P1-201ENST00000612874 516 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AL162274.2-201ENST00000614406 332 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 uc_338.34-201ENST00000617467 174 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 AP003400.5-201ENST00000624827 617 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 MIR6733-201ENST00000635723 61 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
HDAC4P56524 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HDAC4P56524 MTND4P14-201ENST00000435799 1354 ntBASIC3.12□□□□□ -1.91
HDAC4P56524 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.11□□□□□ -1.91
HDAC4P56524 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.11□□□□□ -1.91
HDAC4P56524 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.11□□□□□ -1.91
HDAC4P56524 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HDAC4P56524 RNU6-715P-201ENST00000365204 103 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 RNU6-395P-201ENST00000365662 106 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HDAC4P56524 MIR888-201ENST00000401186 77 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AL356776.1-201ENST00000406574 447 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 Y_RNA.615-201ENST00000410769 117 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.11□□□□□ -1.91
HDAC4P56524 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.11□□□□□ -1.91
HDAC4P56524 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.11□□□□□ -1.91
HDAC4P56524 AL645937.1-202ENST00000421799 937 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 HMGN2P30-201ENST00000423237 256 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HDAC4P56524 MYL8P-204ENST00000431574 518 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.11□□□□□ -1.91
HDAC4P56524 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.11□□□□□ -1.91
HDAC4P56524 AL671855.1-201ENST00000446875 1203 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 RN7SL633P-201ENST00000488974 297 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC022493.1-201ENST00000492984 337 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC139453.3-201ENST00000493276 369 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.11□□□□□ -1.91
HDAC4P56524 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.11□□□□□ -1.91
HDAC4P56524 RN7SKP43-201ENST00000516173 320 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 SNORA20.3-201ENST00000516880 132 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC009902.1-201ENST00000519351 183 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HDAC4P56524 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.11□□□□□ -1.91
HDAC4P56524 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.11□□□□□ -1.91
HDAC4P56524 MIR1273C-201ENST00000578669 77 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 MIR548AC-201ENST00000585049 88 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AL451007.1-201ENST00000595491 289 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC073539.2-201ENST00000597113 165 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AL355598.1-201ENST00000604169 202 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC090617.10-201ENST00000624308 134 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC006386.2-201ENST00000624491 75 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 AC012005.1-201ENST00000624575 75 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HDAC4P56524 AC108206.1-201ENST00000570186 4159 ntBASIC3.11□□□□□ -1.91
HDAC4P56524 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HDAC4P56524 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HDAC4P56524 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
HDAC4P56524 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HDAC4P56524 Y_RNA.33-201ENST00000362591 102 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 SNORA71.1-201ENST00000364523 117 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 RNU4-66P-201ENST00000365199 138 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 Y_RNA.378-201ENST00000365652 113 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HDAC4P56524 RNU6-1025P-201ENST00000410629 104 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.1□□□□□ -1.91
HDAC4P56524 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.1□□□□□ -1.91
HDAC4P56524 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC3.1□□□□□ -1.91
HDAC4P56524 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 RPL37P4-201ENST00000448908 268 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 RPL21P99-201ENST00000480369 423 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.1□□□□□ -1.91
HDAC4P56524 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.1□□□□□ -1.91
HDAC4P56524 AC097462.2-201ENST00000504623 481 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 AC018710.1-201ENST00000506509 158 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.1□□□□□ -1.91
HDAC4P56524 Y_RNA.665-201ENST00000516177 98 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 RNA5SP76-201ENST00000516277 87 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 AC009812.2-201ENST00000517657 457 ntBASIC3.1□□□□□ -1.91
HDAC4P56524 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.1□□□□□ -1.91
HDAC4P56524 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HDAC4P56524 AL391261.3-201ENST00000557194 520 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms