Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR5696-201ENST00000578474 85 ntBASIC3.66□□□□□ -1.82
MSX2P35548 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.66□□□□□ -1.82
MSX2P35548 AL365434.2-201ENST00000607979 234 ntBASIC3.66□□□□□ -1.82
MSX2P35548 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.66□□□□□ -1.82
MSX2P35548 AL159153.1-201ENST00000619688 317 ntBASIC3.66□□□□□ -1.82
MSX2P35548 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.66□□□□□ -1.82
MSX2P35548 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.66□□□□□ -1.82
MSX2P35548 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
MSX2P35548 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.66□□□□□ -1.82
MSX2P35548 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
MSX2P35548 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.82
MSX2P35548 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.82
MSX2P35548 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
MSX2P35548 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.82
MSX2P35548 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
MSX2P35548 RPL9P7-201ENST00000330965 580 ntBASIC3.65□□□□□ -1.83
MSX2P35548 RNA5SP447-201ENST00000363749 119 ntBASIC3.65□□□□□ -1.83
MSX2P35548 RNU4-50P-201ENST00000364361 141 ntBASIC3.65□□□□□ -1.83
MSX2P35548 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.65□□□□□ -1.83
MSX2P35548 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.65□□□□□ -1.83
MSX2P35548 SNORA51.11-201ENST00000384442 131 ntBASIC3.65□□□□□ -1.83
MSX2P35548 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
MSX2P35548 SAR1AP2-201ENST00000392696 594 ntBASIC3.65□□□□□ -1.83
MSX2P35548 RNU6-1025P-201ENST00000410629 104 ntBASIC3.65□□□□□ -1.83
MSX2P35548 SNORD56-201ENST00000413522 71 ntBASIC3.65□□□□□ -1.83
MSX2P35548 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.65□□□□□ -1.83
MSX2P35548 AL158156.1-201ENST00000422509 473 ntBASIC3.65□□□□□ -1.83
MSX2P35548 AL513043.1-201ENST00000439124 535 ntBASIC3.65□□□□□ -1.83
MSX2P35548 RPL9P9-202ENST00000466501 579 ntBASIC3.65□□□□□ -1.83
MSX2P35548 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.65□□□□□ -1.83
MSX2P35548 RNU6-897P-201ENST00000517135 105 ntBASIC3.65□□□□□ -1.83
MSX2P35548 AC144568.1-201ENST00000520139 137 ntBASIC3.65□□□□□ -1.83
MSX2P35548 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.65□□□□□ -1.83
MSX2P35548 SYF2P1-201ENST00000550658 413 ntBASIC3.65□□□□□ -1.83
MSX2P35548 AC007375.1-201ENST00000554513 578 ntBASIC3.65□□□□□ -1.83
MSX2P35548 MIR4738-201ENST00000579134 87 ntBASIC3.65□□□□□ -1.83
MSX2P35548 AC002545.1-201ENST00000592511 181 ntBASIC3.65□□□□□ -1.83
MSX2P35548 AC091167.4-201ENST00000605079 184 ntBASIC3.65□□□□□ -1.83
MSX2P35548 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.65□□□□□ -1.83
MSX2P35548 U7.8-201ENST00000619968 63 ntBASIC3.65□□□□□ -1.83
MSX2P35548 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.65□□□□□ -1.83
MSX2P35548 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
MSX2P35548 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
MSX2P35548 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
MSX2P35548 ZNF299P-201ENST00000406845 1804 ntBASIC3.65□□□□□ -1.83
MSX2P35548 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
MSX2P35548 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
MSX2P35548 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
MSX2P35548 DEFB108F-201ENST00000344638 222 ntBASIC3.64□□□□□ -1.83
MSX2P35548 Y_RNA.19-201ENST00000362462 99 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-37P-201ENST00000362692 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-595P-201ENST00000363944 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-11P-201ENST00000364234 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-7-201ENST00000364784 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-8-201ENST00000365467 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-25P-201ENST00000383873 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-1-201ENST00000383898 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-209P-201ENST00000384118 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-48P-201ENST00000384161 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-36P-201ENST00000384172 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-4P-201ENST00000384205 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-5P-201ENST00000384238 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-3P-201ENST00000384314 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-16P-201ENST00000384385 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-15P-201ENST00000384534 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-2-201ENST00000384627 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-29P-201ENST00000384637 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-9-201ENST00000384776 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-33P-201ENST00000384793 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
MSX2P35548 AL159169.1-201ENST00000421119 127 ntBASIC3.64□□□□□ -1.83
MSX2P35548 EIF4EP2-201ENST00000422816 654 ntBASIC3.64□□□□□ -1.83
MSX2P35548 AC139712.2-201ENST00000424302 339 ntBASIC3.64□□□□□ -1.83
MSX2P35548 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.64□□□□□ -1.83
MSX2P35548 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.64□□□□□ -1.83
MSX2P35548 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.64□□□□□ -1.83
MSX2P35548 HIGD1AP2-201ENST00000446367 280 ntBASIC3.64□□□□□ -1.83
MSX2P35548 FABP5P15-201ENST00000453566 214 ntBASIC3.64□□□□□ -1.83
MSX2P35548 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.64□□□□□ -1.83
MSX2P35548 RPL23AP62-201ENST00000463396 453 ntBASIC3.64□□□□□ -1.83
MSX2P35548 AC133134.1-201ENST00000466800 359 ntBASIC3.64□□□□□ -1.83
MSX2P35548 SNRPGP3-201ENST00000469405 227 ntBASIC3.64□□□□□ -1.83
MSX2P35548 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.64□□□□□ -1.83
MSX2P35548 RN7SKP122-201ENST00000515923 296 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-397P-201ENST00000516226 104 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-911P-201ENST00000516523 104 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNA5SP179-201ENST00000517284 121 ntBASIC3.64□□□□□ -1.83
MSX2P35548 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.64□□□□□ -1.83
MSX2P35548 CYCSP29-201ENST00000533731 318 ntBASIC3.64□□□□□ -1.83
MSX2P35548 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.64□□□□□ -1.83
MSX2P35548 MIR1254-2-201ENST00000579553 63 ntBASIC3.64□□□□□ -1.83
MSX2P35548 AC009314.1-201ENST00000603871 304 ntBASIC3.64□□□□□ -1.83
MSX2P35548 AL356218.2-201ENST00000605264 187 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RNU6-6P-201ENST00000606623 107 ntBASIC3.64□□□□□ -1.83
MSX2P35548 AC096772.1-201ENST00000609146 564 ntBASIC3.64□□□□□ -1.83
MSX2P35548 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.64□□□□□ -1.83
MSX2P35548 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
MSX2P35548 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
MSX2P35548 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms