Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC097473.1-201ENST00000508142 408 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.58□□□□□ -1.84
COL3A1P02461 AC018797.3-201ENST00000513388 1241 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.58□□□□□ -1.84
COL3A1P02461 HMGB1P41-201ENST00000520234 440 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.58□□□□□ -1.84
COL3A1P02461 BNIP3P25-201ENST00000596023 559 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 AC103710.2-201ENST00000609912 942 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 AC098657.3-201ENST00000620434 263 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 AC000123.2-201ENST00000623124 461 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.58□□□□□ -1.84
COL3A1P02461 CDC27P2-201ENST00000425026 1922 ntBASIC3.58□□□□□ -1.84
COL3A1P02461 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL3A1P02461 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL3A1P02461 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.57□□□□□ -1.84
COL3A1P02461 RNU6-99P-201ENST00000364721 107 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 SNORA75B-201ENST00000384053 137 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 Y_RNA.455-201ENST00000384230 98 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 Y_RNA.489-201ENST00000384410 101 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 EIF4E2P1-201ENST00000393781 255 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL3A1P02461 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.57□□□□□ -1.84
COL3A1P02461 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.57□□□□□ -1.84
COL3A1P02461 SKA2P1-201ENST00000425592 390 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AC063976.3-201ENST00000426849 329 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AL590399.6-201ENST00000446396 307 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.57□□□□□ -1.84
COL3A1P02461 Y_RNA.638-201ENST00000459374 113 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AC021382.1-201ENST00000483523 359 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.57□□□□□ -1.84
COL3A1P02461 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL3A1P02461 RNA5SP76-201ENST00000516277 87 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 SNORA9.3-201ENST00000516383 129 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AL137161.1-201ENST00000532231 390 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.57□□□□□ -1.84
COL3A1P02461 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL3A1P02461 UBE2L4-201ENST00000587688 464 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AC023043.2-201ENST00000589678 1026 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AC100812.1-201ENST00000607622 580 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AC007485.1-201ENST00000616755 206 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 PISRT1.1-201ENST00000616930 107 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 AC011155.2-201ENST00000623202 216 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.57□□□□□ -1.84
COL3A1P02461 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.57□□□□□ -1.84
COL3A1P02461 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.57□□□□□ -1.84
COL3A1P02461 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL3A1P02461 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.56□□□□□ -1.84
COL3A1P02461 RNU6-179P-201ENST00000363350 107 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 Y_RNA.167-201ENST00000363735 109 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 Y_RNA.646-201ENST00000410980 101 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 RNU4-61P-201ENST00000411243 107 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.56□□□□□ -1.84
COL3A1P02461 SNAP23P1-201ENST00000433229 246 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.56□□□□□ -1.84
COL3A1P02461 MTND1P17-201ENST00000448961 204 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.56□□□□□ -1.84
COL3A1P02461 AC068305.1-201ENST00000497406 726 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.56□□□□□ -1.84
COL3A1P02461 Y_RNA.661-201ENST00000516003 99 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 RNU6-388P-201ENST00000517012 105 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 RNU6-389P-201ENST00000517048 105 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.56□□□□□ -1.84
COL3A1P02461 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.56□□□□□ -1.84
COL3A1P02461 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.56□□□□□ -1.84
COL3A1P02461 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.56□□□□□ -1.84
COL3A1P02461 MIR4635-201ENST00000583759 79 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 BNIP3P16-201ENST00000589779 534 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.56□□□□□ -1.84
COL3A1P02461 AL596245.1-201ENST00000618994 362 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 AC010378.1-201ENST00000619270 362 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.56□□□□□ -1.84
COL3A1P02461 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL3A1P02461 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL3A1P02461 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
COL3A1P02461 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.56□□□□□ -1.84
COL3A1P02461 MTND5P30-201ENST00000452896 1731 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL3A1P02461 PNPT1P2-201ENST00000456768 2050 ntBASIC3.56□□□□□ -1.84
COL3A1P02461 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL3A1P02461 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL3A1P02461 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL3A1P02461 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL3A1P02461 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL3A1P02461 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL3A1P02461 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL3A1P02461 SNORD3E-201ENST00000362899 217 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 Y_RNA.80-201ENST00000362996 102 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 Y_RNA.234-201ENST00000364409 97 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 Y_RNA.463-201ENST00000384271 102 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 SNORA67.4-201ENST00000384688 142 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 MIR518C-201ENST00000384822 101 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 MIR137-201ENST00000385223 102 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 RNU2-3P-201ENST00000410144 191 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 POLHP1-201ENST00000411806 470 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.55□□□□□ -1.84
COL3A1P02461 DPH3P2-201ENST00000422618 250 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 AC092451.1-201ENST00000480211 153 ntBASIC3.55□□□□□ -1.84
COL3A1P02461 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
COL3A1P02461 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms