Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-108P-201ENST00000365558 107 ntBASIC2.31□□□□□ -2.04
SDC3O75056 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
SDC3O75056 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
SDC3O75056 RNU6-641P-201ENST00000384006 107 ntBASIC2.31□□□□□ -2.04
SDC3O75056 MIR144-201ENST00000384886 86 ntBASIC2.31□□□□□ -2.04
SDC3O75056 MIR1289-2-201ENST00000408360 111 ntBASIC2.31□□□□□ -2.04
SDC3O75056 RNU6-1025P-201ENST00000410629 104 ntBASIC2.31□□□□□ -2.04
SDC3O75056 RNU6-387P-201ENST00000411331 105 ntBASIC2.31□□□□□ -2.04
SDC3O75056 RNU6-195P-201ENST00000411352 109 ntBASIC2.31□□□□□ -2.04
SDC3O75056 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.31□□□□□ -2.04
SDC3O75056 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.31□□□□□ -2.04
SDC3O75056 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.31□□□□□ -2.04
SDC3O75056 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.31□□□□□ -2.04
SDC3O75056 AC091965.2-201ENST00000512324 613 ntBASIC2.31□□□□□ -2.04
SDC3O75056 SNORA31.19-201ENST00000517079 126 ntBASIC2.31□□□□□ -2.04
SDC3O75056 RNU1-104P-201ENST00000517280 175 ntBASIC2.31□□□□□ -2.04
SDC3O75056 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC3O75056 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.31□□□□□ -2.04
SDC3O75056 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.31□□□□□ -2.04
SDC3O75056 LINC00933-203ENST00000559812 219 ntBASIC2.31□□□□□ -2.04
SDC3O75056 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.31□□□□□ -2.04
SDC3O75056 AC069294.1-201ENST00000608397 350 ntBASIC2.31□□□□□ -2.04
SDC3O75056 AC005332.10-201ENST00000612725 619 ntBASIC2.31□□□□□ -2.04
SDC3O75056 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.31□□□□□ -2.04
SDC3O75056 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
SDC3O75056 AL359854.1-201ENST00000614203 1594 ntBASIC2.31□□□□□ -2.04
SDC3O75056 MTND5P6-201ENST00000422338 1798 ntBASIC2.31□□□□□ -2.04
SDC3O75056 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SDC3O75056 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC3O75056 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.3□□□□□ -2.04
SDC3O75056 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.3□□□□□ -2.04
SDC3O75056 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC3O75056 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SDC3O75056 RNU6-1097P-201ENST00000363586 107 ntBASIC2.3□□□□□ -2.04
SDC3O75056 SNORA67.1-201ENST00000364749 141 ntBASIC2.3□□□□□ -2.04
SDC3O75056 RNU6-1280P-201ENST00000365211 107 ntBASIC2.3□□□□□ -2.04
SDC3O75056 RNU6-166P-201ENST00000384371 107 ntBASIC2.3□□□□□ -2.04
SDC3O75056 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.3□□□□□ -2.04
SDC3O75056 RNU4-26P-201ENST00000410270 107 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC3O75056 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
SDC3O75056 AL031779.1-201ENST00000415663 330 ntBASIC2.3□□□□□ -2.04
SDC3O75056 C1DP2-201ENST00000418167 426 ntBASIC2.3□□□□□ -2.04
SDC3O75056 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.3□□□□□ -2.04
SDC3O75056 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.3□□□□□ -2.04
SDC3O75056 MTCYBP5-201ENST00000423752 1135 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AL160275.3-201ENST00000423876 471 ntBASIC2.3□□□□□ -2.04
SDC3O75056 GPR143P-201ENST00000434155 205 ntBASIC2.3□□□□□ -2.04
SDC3O75056 MTATP6P16-201ENST00000434543 526 ntBASIC2.3□□□□□ -2.04
SDC3O75056 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC3O75056 AC244505.5-201ENST00000443639 207 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AL078601.1-201ENST00000444542 271 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC096638.1-201ENST00000444678 216 ntBASIC2.3□□□□□ -2.04
SDC3O75056 MTND1P27-201ENST00000451117 902 ntBASIC2.3□□□□□ -2.04
SDC3O75056 MTCYBP1-201ENST00000454315 1119 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC3O75056 AP001324.2-201ENST00000461163 319 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC3O75056 AC116562.3-201ENST00000506136 177 ntBASIC2.3□□□□□ -2.04
SDC3O75056 ARL2BPP4-201ENST00000506854 471 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC3O75056 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC3O75056 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.3□□□□□ -2.04
SDC3O75056 MTCO3P28-201ENST00000513351 515 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC3O75056 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.3□□□□□ -2.04
SDC3O75056 RNA5SP112-201ENST00000515937 99 ntBASIC2.3□□□□□ -2.04
SDC3O75056 RNU6-123P-201ENST00000516163 102 ntBASIC2.3□□□□□ -2.04
SDC3O75056 RNU6-410P-201ENST00000517006 107 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC068587.5-201ENST00000528506 175 ntBASIC2.3□□□□□ -2.04
SDC3O75056 MIR1273D-201ENST00000577266 86 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.3□□□□□ -2.04
SDC3O75056 MIR4769-201ENST00000584126 77 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC008521.1-201ENST00000587471 187 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.3□□□□□ -2.04
SDC3O75056 AL121992.2-201ENST00000606262 256 ntBASIC2.3□□□□□ -2.04
SDC3O75056 AP001486.3-201ENST00000615334 372 ntBASIC2.3□□□□□ -2.04
SDC3O75056 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
SDC3O75056 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SDC3O75056 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SDC3O75056 MTND5P17-201ENST00000418405 1603 ntBASIC2.3□□□□□ -2.04
SDC3O75056 Y_RNA.201-201ENST00000364052 96 ntBASIC2.29□□□□□ -2.04
SDC3O75056 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.29□□□□□ -2.04
SDC3O75056 SNORA75B-201ENST00000384053 137 ntBASIC2.29□□□□□ -2.04
SDC3O75056 MIR518D-201ENST00000385014 87 ntBASIC2.29□□□□□ -2.04
SDC3O75056 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
SDC3O75056 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
SDC3O75056 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.29□□□□□ -2.04
SDC3O75056 CYCSP48-201ENST00000417124 323 ntBASIC2.29□□□□□ -2.04
SDC3O75056 PIGFP2-201ENST00000421400 651 ntBASIC2.29□□□□□ -2.04
SDC3O75056 AC007560.1-201ENST00000426912 237 ntBASIC2.29□□□□□ -2.04
SDC3O75056 RPL30P4-201ENST00000429309 333 ntBASIC2.29□□□□□ -2.04
SDC3O75056 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
SDC3O75056 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.29□□□□□ -2.04
SDC3O75056 RPL31P35-201ENST00000431058 377 ntBASIC2.29□□□□□ -2.04
SDC3O75056 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.29□□□□□ -2.04
SDC3O75056 USP9YP29-201ENST00000445112 563 ntBASIC2.29□□□□□ -2.04
SDC3O75056 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.29□□□□□ -2.04
SDC3O75056 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.29□□□□□ -2.04
SDC3O75056 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms