Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC022018.1-201ENST00000430685 241 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 RPL21P2-201ENST00000440049 481 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXC11O43248 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXC11O43248 MTCO3P9-201ENST00000506989 781 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXC11O43248 RNU2-69P-201ENST00000516061 100 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 RNU6-1281P-201ENST00000516223 105 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 RNU1-143P-201ENST00000516296 146 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.08□□□□□ -1.92
HOXC11O43248 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXC11O43248 COX6CP5-201ENST00000527162 228 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 AC068790.6-201ENST00000602558 258 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 AL162413.1-201ENST00000603198 110 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXC11O43248 U1.23-201ENST00000610293 146 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 RNU1-68P-201ENST00000615382 146 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 U1.39-201ENST00000621562 146 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXC11O43248 MTND5P30-201ENST00000452896 1731 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
HOXC11O43248 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 AC096644.4-201ENST00000563417 2912 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 U8.9-201ENST00000365667 134 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 RNU6-851P-201ENST00000384565 107 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 RNU2-25P-201ENST00000411041 191 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.07□□□□□ -1.92
HOXC11O43248 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXC11O43248 AL365400.1-201ENST00000431854 640 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 SEPT14P3-201ENST00000439401 183 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 AL732372.2-207ENST00000445840 183 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC11O43248 SEPT14P2-201ENST00000453405 183 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 RNU7-180P-201ENST00000459240 63 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 MRPL42P6-201ENST00000486397 371 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 SEPT14P4-201ENST00000513445 186 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 RNU4-29P-201ENST00000515943 174 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 RNA5SP217-201ENST00000515959 91 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 Y_RNA.687-201ENST00000516558 91 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 Y_RNA.704-201ENST00000516851 102 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC11O43248 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXC11O43248 FO082796.1-201ENST00000523795 183 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXC11O43248 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC11O43248 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 HSPE1P20-201ENST00000538133 289 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 AC107016.2-201ENST00000547968 190 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC11O43248 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC11O43248 AC103810.1-201ENST00000579873 453 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC11O43248 AC025165.5-201ENST00000602802 578 ntBASIC3.07□□□□□ -1.92
HOXC11O43248 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.07□□□□□ -1.92
HOXC11O43248 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC11O43248 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.07□□□□□ -1.92
HOXC11O43248 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC11O43248 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXC11O43248 AC138393.1-203ENST00000327086 343 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 Y_RNA.324-201ENST00000365165 102 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 Y_RNA.516-201ENST00000384541 124 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 SNORA16.2-201ENST00000390991 127 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC11O43248 FTH1P15-201ENST00000406984 280 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 SNORA11.2-201ENST00000408318 127 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 MTND5P19-201ENST00000424872 1794 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 AL135938.1-201ENST00000443141 297 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 RPL23AP11-201ENST00000475260 469 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC11O43248 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXC11O43248 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXC11O43248 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC11O43248 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXC11O43248 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.06□□□□□ -1.92
HOXC11O43248 AL670379.10-201ENST00000604330 253 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 AP000787.2-201ENST00000604432 568 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 AL670379.9-201ENST00000605428 253 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 AL627309.6-201ENST00000606857 840 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 AC010338.1-201ENST00000621823 717 ntBASIC3.06□□□□□ -1.92
HOXC11O43248 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC11O43248 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXC11O43248 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC11O43248 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.05□□□□□ -1.92
HOXC11O43248 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC11O43248 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXC11O43248 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
HOXC11O43248 Y_RNA.9-201ENST00000362354 101 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 SNORA5B-201ENST00000363786 132 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 RNU4-66P-201ENST00000365199 138 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 Y_RNA.399-201ENST00000383955 105 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 RNU6-483P-201ENST00000384088 108 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 Y_RNA.500-201ENST00000384466 111 ntBASIC3.05□□□□□ -1.92
HOXC11O43248 MIR627-201ENST00000384979 97 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms