Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 RNU4-49P-201ENST00000516080 140 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 SNORA43.2-201ENST00000516652 128 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-1332P-201ENST00000516666 104 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 MIR3186-201ENST00000577404 85 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC024153.1-201ENST00000603103 365 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC091152.3-201ENST00000604227 325 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC010378.1-201ENST00000619270 362 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 RMST_7.1-201ENST00000621935 268 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 AC002064.3-201ENST00000623448 346 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 HSPA8P1-201ENST00000425843 1833 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 MAPK10-253ENST00000641010 4072 ntBASIC4.8□□□□□ -1.64
CCDC9Q9Y3X0 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-128P-201ENST00000383976 107 ntBASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 IFNA20P-201ENST00000436840 528 ntBASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-256P-201ENST00000516747 97 ntBASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 AC005730.3-201ENST00000583067 366 ntBASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 FAM157A-202ENST00000615155 405 ntBASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 MAPK10-362ENST00000641864 4484 ntBASIC4.79□□□□□ -1.64
CCDC9Q9Y3X0 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-942P-201ENST00000363002 107 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 SNORA72.1-201ENST00000363485 129 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 SNORD116-20-201ENST00000384529 92 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-831P-201ENST00000384548 107 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 MED28P2-201ENST00000475771 317 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 RPL23AP49-201ENST00000492925 468 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 RNU5F-8P-201ENST00000515941 111 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 RNU6-377P-201ENST00000515965 102 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 AC104984.5-201ENST00000586878 94 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 AC008739.2-201ENST00000597006 317 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 AL391813.1-201ENST00000603098 260 ntBASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC9Q9Y3X0 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AP003122.5-201ENST00000527668 3766 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 SNORA5B-201ENST00000363786 132 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 RNA5SP126-201ENST00000365092 109 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 RNU6-748P-201ENST00000384648 107 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AL031121.1-201ENST00000406553 254 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 RNA5SP39-201ENST00000411245 120 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AC022028.1-201ENST00000412054 408 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 VN1R36P-201ENST00000414936 291 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 NDUFB4P5-201ENST00000415445 361 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 MTCO3P46-201ENST00000425787 232 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 MTND4P18-201ENST00000447010 465 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 MRPS36P2-201ENST00000512569 299 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AC046134.1-201ENST00000514454 666 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 RNU6-864P-201ENST00000516256 108 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 RNU6-273P-201ENST00000516937 96 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AC010186.2-204ENST00000537668 439 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AC009163.5-201ENST00000575421 637 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 MIR3529-201ENST00000637713 78 ntBASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
CCDC9Q9Y3X0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 SNORA48.8-201ENST00000391324 134 ntBASIC4.76□□□□□ -1.65
CCDC9Q9Y3X0 MTATP6P23-201ENST00000440153 476 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms