Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 SCARNA24.2-201ENST00000516968 130 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 AC023632.4-201ENST00000517783 191 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 MIR4643-201ENST00000577473 78 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 SDAD1P2-201ENST00000441308 2028 ntBASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.07□□□□□ -1.6
CHMP3Q9Y3E7 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 SNORA60-201ENST00000362396 134 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 RNA5SP235-201ENST00000365411 114 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 RNU6-187P-201ENST00000384139 106 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.541-201ENST00000384640 113 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 MTCO2P33-201ENST00000402100 465 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 MRPL35P1-201ENST00000404272 572 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 Z85995.1-201ENST00000415547 335 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 RPS12P23-201ENST00000419579 400 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 HLA-N-201ENST00000437516 135 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AC104332.1-201ENST00000440471 797 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AC139453.3-201ENST00000493276 369 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AC146944.2-203ENST00000502493 354 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AL359273.1-201ENST00000510918 627 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AC139495.1-202ENST00000513164 354 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 SNORA31.6-201ENST00000516241 130 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 RNU6-1256P-201ENST00000516539 103 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 RNU7-143P-201ENST00000516781 65 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AC034105.4-201ENST00000568304 277 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 ZNF962P-201ENST00000443465 3140 ntBASIC5.06□□□□□ -1.6
CHMP3Q9Y3E7 AL136964.1-201ENST00000622038 2990 ntBASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 U3.13-201ENST00000364804 214 ntBASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 MIR513A2-201ENST00000385249 127 ntBASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 AL139156.1-201ENST00000412785 841 ntBASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 RPS6P12-201ENST00000432491 726 ntBASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 RNU4-71P-201ENST00000516258 113 ntBASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 RNU1-45P-201ENST00000517191 141 ntBASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 MIR7702-201ENST00000621931 59 ntBASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.05□□□□□ -1.6
CHMP3Q9Y3E7 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 Y_RNA.123-201ENST00000363338 102 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 RN7SKP202-201ENST00000410439 330 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 AL392103.1-201ENST00000447000 198 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 AL645939.1-201ENST00000453429 797 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 RN7SKP210-201ENST00000459176 261 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 S100A11P1-201ENST00000477525 312 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 SNORA31.20-201ENST00000517111 133 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 IFITM8P-201ENST00000522529 394 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 AP002770.2-201ENST00000543613 532 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 AC243829.7-201ENST00000633081 225 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 LINC02555-201ENST00000563933 1951 ntBASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
CHMP3Q9Y3E7 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC5.03□□□□□ -1.6
CHMP3Q9Y3E7 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms