Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC140113.4-201ENST00000622087 222 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 AC092435.4-201ENST00000623012 4159 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 OR51H2P-202ENST00000641424 3046 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 AL109809.4-201ENST00000603520 2185 ntBASIC4.23□□□□□ -1.73
HIF3AQ9Y2N7 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-818P-201ENST00000364837 108 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-1286P-201ENST00000383871 107 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.400-201ENST00000383963 111 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.580-201ENST00000391004 95 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 Y_RNA.586-201ENST00000391146 98 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC096638.1-201ENST00000444678 216 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 NDUFS5P3-201ENST00000450668 321 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AL645939.1-201ENST00000453429 797 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AL132838.2-201ENST00000492041 314 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 SNORA43.2-201ENST00000516652 128 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 RN7SKP49-201ENST00000516675 260 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 RNU6-703P-201ENST00000516946 107 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AP004607.1-201ENST00000524456 203 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 CYCSP39-201ENST00000565821 309 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC209154.1-201ENST00000582156 337 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC005255.1-201ENST00000593748 216 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC024153.1-201ENST00000603103 365 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AL391358.1-201ENST00000605342 190 ntBASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.22□□□□□ -1.73
HIF3AQ9Y2N7 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.21□□□□□ -1.73
HIF3AQ9Y2N7 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.21□□□□□ -1.73
HIF3AQ9Y2N7 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
HIF3AQ9Y2N7 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
HIF3AQ9Y2N7 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
HIF3AQ9Y2N7 A2MP1-204ENST00000566278 4130 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 SNORD115-32-201ENST00000364079 82 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.215-201ENST00000364204 112 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 SNORD96B-201ENST00000386148 79 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.629-201ENST00000411368 105 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 RPL23AP26-201ENST00000412728 464 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC092047.1-201ENST00000424997 240 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 HMGN2P21-201ENST00000447764 270 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AL451050.1-201ENST00000450126 415 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 snoU13.20-201ENST00000459180 104 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 RPL7AP6-201ENST00000477943 801 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC093270.2-201ENST00000486157 792 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 RNA5SP464-201ENST00000516251 108 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 SNORD116-25-201ENST00000516517 92 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC107016.1-201ENST00000550463 337 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 MIR7155-201ENST00000615925 56 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC068831.7-201ENST00000616954 363 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 AC005086.4-201ENST00000623065 213 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 MAPK10-303ENST00000641324 3959 ntBASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.21□□□□□ -1.74
HIF3AQ9Y2N7 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.136-201ENST00000363444 102 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 SNORA7.2-201ENST00000364446 145 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 RNA5SP167-201ENST00000365461 116 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-44P-201ENST00000384045 107 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 RNU6-140P-201ENST00000384566 108 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 Y_RNA.571-201ENST00000384753 98 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 MIR10B-201ENST00000385011 110 ntBASIC4.2□□□□□ -1.74
HIF3AQ9Y2N7 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms