Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AL356274.2-201ENST00000624379 3752 ntBASIC3.56□□□□□ -1.84
DKK3Q9UBP4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 RNU6-562P-201ENST00000362731 107 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 RNU6-1188P-201ENST00000363795 107 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 DYNLT3P1-201ENST00000378574 347 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 Y_RNA.422-201ENST00000384054 114 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 MIR514A1-201ENST00000385133 98 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 RNU6-1077P-201ENST00000410506 102 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 RNU6-370P-201ENST00000411008 104 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 RN7SKP53-201ENST00000411337 315 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 DBIP2-201ENST00000419076 262 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 CYCSP35-201ENST00000451978 304 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 ELOCP24-201ENST00000456370 334 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC104472.2-201ENST00000469035 601 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC117503.1-201ENST00000472241 394 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC009901.1-201ENST00000506703 541 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 RNU2-27P-201ENST00000516185 142 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC087854.1-201ENST00000519706 414 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 ELOCP31-201ENST00000540463 467 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 MIR5692A1-201ENST00000580523 69 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC012119.1-201ENST00000603184 222 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC080078.3-201ENST00000605407 463 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC002076.2-201ENST00000617362 122 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 AC007656.2-201ENST00000624902 4547 ntBASIC3.55□□□□□ -1.84
DKK3Q9UBP4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
DKK3Q9UBP4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 Y_RNA.197-201ENST00000364004 102 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 RNU6-283P-201ENST00000364788 107 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AL391417.1-201ENST00000404100 426 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AL159987.2-201ENST00000432754 307 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 TBCAP3-201ENST00000512475 312 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 RNU6-1045P-201ENST00000516321 107 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 SCARNA15.2-201ENST00000516409 127 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 SNRPGP16-201ENST00000533275 226 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AC100830.2-201ENST00000581636 240 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AC107294.1-201ENST00000609524 467 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AL355810.1-201ENST00000614629 552 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AL355365.1-201ENST00000616480 294 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 FAM35CP-201ENST00000554755 2470 ntBASIC3.54□□□□□ -1.84
DKK3Q9UBP4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.54□□□□□ -1.84
DKK3Q9UBP4 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 Y_RNA.146-201ENST00000363549 102 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 Y_RNA.202-201ENST00000364083 110 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AL158156.1-201ENST00000422509 473 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 Z82205.1-201ENST00000428456 297 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AC130509.1-201ENST00000464158 433 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AC087884.1-201ENST00000469738 328 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 RPS15AP34-201ENST00000487776 387 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AC090096.1-201ENST00000489168 390 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 MED28P6-201ENST00000558776 231 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 U4.6-201ENST00000621618 127 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 MIR3651-201ENST00000630427 90 ntBASIC3.53□□□□□ -1.84
DKK3Q9UBP4 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
DKK3Q9UBP4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
DKK3Q9UBP4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
DKK3Q9UBP4 UBE2L2-201ENST00000254302 429 ntBASIC3.52□□□□□ -1.85
DKK3Q9UBP4 MIR369-201ENST00000362155 70 ntBASIC3.52□□□□□ -1.85
DKK3Q9UBP4 Y_RNA.132-201ENST00000363421 102 ntBASIC3.52□□□□□ -1.85
DKK3Q9UBP4 RNA5SP50-201ENST00000363731 107 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms