Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MTCYBP6-201ENST00000441810 138 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU7-187P-201ENST00000458985 68 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-1170P-201ENST00000515974 106 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 MIR2114-201ENST00000516645 80 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-928P-201ENST00000516876 104 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RN7SKP57-201ENST00000517248 293 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 IGKV2-26-201ENST00000518305 343 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 MIR5690-201ENST00000583739 73 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RNU6-6P-201ENST00000606623 107 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 AC090971.5-201ENST00000621102 293 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 Z69720.2-201ENST00000624755 279 ntBASIC3.62□□□□□ -1.83
TDP1Q9NUW8 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
TDP1Q9NUW8 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 KPNA2P1-201ENST00000458289 1591 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 RNU6-778P-201ENST00000363269 103 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 RNU6-306P-201ENST00000384617 107 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 TOMM20P4-201ENST00000427861 435 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AC027575.1-201ENST00000481064 460 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AC093663.1-201ENST00000497190 394 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 BTF3L4P4-201ENST00000506381 449 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 RNU1-103P-201ENST00000516502 125 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 RNU6-1213P-201ENST00000517075 94 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AL121821.2-201ENST00000556081 394 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AMZ2P1-203ENST00000565833 850 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AC080078.3-201ENST00000605407 463 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AL161423.1-201ENST00000613700 262 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 AL669831.3-213ENST00000636676 183 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 FAM35BP-202ENST00000497389 3337 ntBASIC3.61□□□□□ -1.83
TDP1Q9NUW8 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
TDP1Q9NUW8 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AC032011.1-201ENST00000611703 1549 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AP001148.1-201ENST00000624124 2359 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 RNU6-270P-201ENST00000364131 105 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 SNORD42.2-201ENST00000365570 69 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 RNU6-1035P-201ENST00000384477 107 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 MIR34A-201ENST00000385130 110 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 RPS4XP3-201ENST00000398541 413 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 SNORD56-201ENST00000413522 71 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 Y_RNA.653-201ENST00000459091 95 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 SNRPGP3-201ENST00000469405 227 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 RN7SL594P-201ENST00000470590 287 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AC084357.1-201ENST00000473404 255 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AC006445.2-201ENST00000510061 472 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 FCF1P8-201ENST00000510322 597 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AC026782.1-201ENST00000512952 449 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 RNU6-1183P-201ENST00000517054 60 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 CYCSP39-201ENST00000565821 309 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 MIR4782-201ENST00000577987 79 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 AL355598.1-201ENST00000604169 202 ntBASIC3.6□□□□□ -1.83
TDP1Q9NUW8 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
TDP1Q9NUW8 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC002546.1-201ENST00000588041 2504 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 RNU6-884P-201ENST00000363889 107 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 SNORA38.1-201ENST00000364172 131 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 RNA5SP42-201ENST00000364278 115 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 Y_RNA.473-201ENST00000384333 102 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 RNU6-658P-201ENST00000384606 106 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 RNU6-328P-201ENST00000390887 106 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 SNORA75.4-201ENST00000391278 119 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 RNU6-293P-201ENST00000411259 106 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 HMGN2P30-201ENST00000423237 256 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AL353729.1-201ENST00000425044 720 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC093151.1-201ENST00000427711 313 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AL158071.1-201ENST00000430315 461 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 CYCSP32-201ENST00000440548 321 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.59□□□□□ -1.83
TDP1Q9NUW8 HMGB3P8-201ENST00000449709 577 ntBASIC3.59□□□□□ -1.83
TDP1Q9NUW8 MTCO3P10-201ENST00000455912 772 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 147.9 ms