Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 Y_RNA.167-201ENST00000363735 109 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 RNU6-266P-201ENST00000364225 107 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 RNA5SP479-201ENST00000364858 117 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 RNA5SP219-201ENST00000390940 113 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 U3.26-201ENST00000391236 204 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AL513475.1-201ENST00000406602 315 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AC018644.1-201ENST00000429934 551 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 RPL27AP5-201ENST00000469428 449 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 RPL21P99-201ENST00000480369 423 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 RPL38P4-201ENST00000502376 214 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AC114781.4-201ENST00000513707 639 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 SCARNA11.3-201ENST00000517276 130 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 MTND1P5-201ENST00000517906 940 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AP004607.1-201ENST00000524456 203 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AC106785.1-201ENST00000565935 262 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AP003465.2-201ENST00000602571 373 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AC123912.5-201ENST00000605470 343 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 DISC2.1-201ENST00000612827 205 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AL355365.1-201ENST00000616480 294 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 AC026585.1-201ENST00000619582 524 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 SCARNA4-202ENST00000625402 129 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 OR4G1P-203ENST00000641984 1631 ntBASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.67□□□□□ -1.98
CHMP1AQ9HD42 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 MTND4P5-201ENST00000435821 1374 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 Y_RNA.89-201ENST00000363031 102 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 Y_RNA.231-201ENST00000364358 102 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 Y_RNA.256-201ENST00000364594 104 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 Y_RNA.480-201ENST00000384364 102 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 RNU6-748P-201ENST00000384648 107 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 RAP1BP3-201ENST00000407180 549 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 OR9R1P-201ENST00000412200 877 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 SYF2P2-201ENST00000417620 583 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 EIF1P1-201ENST00000421436 341 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC122718.1-201ENST00000439448 744 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 UBBP3-201ENST00000445497 241 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AL133547.1-201ENST00000448546 220 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC091885.1-201ENST00000506658 268 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 TBCAP3-201ENST00000512475 312 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 SNORA43.2-201ENST00000516652 128 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 RNU6-826P-201ENST00000516827 104 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC023632.4-201ENST00000517783 191 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 BTF3P12-201ENST00000519620 469 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC078814.3-201ENST00000553036 491 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 OR1M4P-201ENST00000589199 287 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 VN1R80P-201ENST00000597126 338 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AL137843.1-201ENST00000605078 385 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 ATP1B3P1-201ENST00000605365 821 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 RNU6-89P-201ENST00000606519 100 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 RMST_3.1-201ENST00000611651 109 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC138627.2-201ENST00000624202 601 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 AC024614.3-201ENST00000637860 256 ntBASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CHMP1AQ9HD42 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
CHMP1AQ9HD42 RNU6-37P-201ENST00000362692 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-82P-201ENST00000363970 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-11P-201ENST00000364234 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-522P-201ENST00000364497 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-7-201ENST00000364784 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-534P-201ENST00000364877 106 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-8-201ENST00000365467 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-25P-201ENST00000383873 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-1-201ENST00000383898 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-48P-201ENST00000384161 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-36P-201ENST00000384172 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-4P-201ENST00000384205 107 ntBASIC2.65□□□□□ -1.99
CHMP1AQ9HD42 RNU6-5P-201ENST00000384238 107 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms