Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RNU6-831P-201ENST00000384548 107 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 MIR184-201ENST00000384962 84 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 MIR10A-201ENST00000385043 110 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 RNA5SP38-201ENST00000410750 119 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 RNU6-607P-201ENST00000411283 108 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 RPL26P27-201ENST00000414397 437 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC107083.1-201ENST00000439643 279 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC128713.1-201ENST00000471495 306 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 TRBVA-201ENST00000498804 316 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AP000867.2-201ENST00000532468 320 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 H3F3AP1-201ENST00000559984 334 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC026464.5-201ENST00000562497 722 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 MIR4742-201ENST00000581069 85 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC091135.1-201ENST00000585943 307 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AL645944.1-201ENST00000603857 493 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC007938.3-201ENST00000604965 623 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 AC099654.5-201ENST00000636479 350 ntBASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PAAF1Q9BRP4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
PAAF1Q9BRP4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AC005183.1-201ENST00000603687 1979 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 Y_RNA.142-201ENST00000363491 102 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 Y_RNA.324-201ENST00000365165 102 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 RNU1-73P-201ENST00000383971 164 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 SNORA40C-201ENST00000391285 128 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 PGBD4P6-201ENST00000421501 610 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AL627311.1-201ENST00000431514 115 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AL139132.1-201ENST00000431587 344 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 HMGN1P18-201ENST00000457642 277 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AC117440.1-201ENST00000474107 571 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 RPS4XP22-201ENST00000480755 780 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 RNU1-86P-201ENST00000516108 154 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 RNU1-107P-201ENST00000516617 154 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 LRRC37A5P-203ENST00000580181 585 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 uc_338.5-201ENST00000611839 155 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AL138880.2-201ENST00000616214 239 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.27□□□□□ -1.89
PAAF1Q9BRP4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 RNU6-254P-201ENST00000363377 107 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 Y_RNA.167-201ENST00000363735 109 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 RNU6-270P-201ENST00000364131 105 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 SNORD81.2-201ENST00000365153 76 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 RNU6-166P-201ENST00000384371 107 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 Y_RNA.510-201ENST00000384511 114 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 RNU6-328P-201ENST00000390887 106 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 RNA5SP31-201ENST00000411144 127 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AL592148.1-201ENST00000413568 445 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 EEF1A1P41-201ENST00000414667 207 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 RPS15AP6-201ENST00000420703 385 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 MYL8P-204ENST00000431574 518 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 RNU6-329P-201ENST00000459618 107 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AC087884.1-201ENST00000469738 328 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AC117503.1-201ENST00000472241 394 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AC087854.1-201ENST00000519706 414 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 MIR5692C1-201ENST00000585309 91 ntBASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PAAF1Q9BRP4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.25□□□□□ -1.89
PAAF1Q9BRP4 MTND5P7-201ENST00000413558 1798 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms