Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-389P-201ENST00000517048 105 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-840P-201ENST00000517275 65 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AP006245.1-201ENST00000522549 120 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 MIR4325-201ENST00000583049 90 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AC005357.1-201ENST00000588399 301 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 AC016727.2-201ENST00000603988 621 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 ELOCP5-201ENST00000604924 333 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 Z83843.1-201ENST00000604070 3685 ntBASIC4.49□□□□□ -1.69
USHBP1Q8N6Y0 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 Y_RNA.257-201ENST00000364596 102 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-283P-201ENST00000364788 107 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-1303P-201ENST00000364841 107 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 Y_RNA.307-201ENST00000365022 117 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 MIR708-201ENST00000390708 88 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 MRPS18CP6-201ENST00000423587 223 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC112492.4-201ENST00000456549 352 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 RPL9P32-201ENST00000464118 620 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC011005.2-201ENST00000487324 359 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 RPS26P15-201ENST00000488067 348 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC023141.12-201ENST00000512399 199 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 RNY3P15-201ENST00000516297 97 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC026333.2-201ENST00000542164 106 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC126177.3-201ENST00000551839 688 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 EIF4BP1-201ENST00000554881 351 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 MIR5004-201ENST00000579078 107 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 RNU6-85P-201ENST00000605989 107 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 HMGN2P28-201ENST00000606102 262 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 HMGB1P24-202ENST00000615653 685 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 AC006065.5-201ENST00000623427 349 ntBASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
USHBP1Q8N6Y0 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 Y_RNA.512-201ENST00000384518 102 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 CKS1BP5-201ENST00000434172 273 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 OSTCP8-201ENST00000445117 448 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 PCNPP5-201ENST00000452246 481 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 RPS23P3-201ENST00000470993 430 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 RPL17P19-201ENST00000489069 552 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 AC006445.1-201ENST00000491925 405 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 RNA5SP341-201ENST00000516261 117 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 Z98751.3-201ENST00000604447 521 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 AL031601.2-202ENST00000622650 282 ntBASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
USHBP1Q8N6Y0 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 Y_RNA.314-201ENST00000365114 102 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-596P-201ENST00000365395 98 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 SNORD14.1-201ENST00000365609 90 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-76P-201ENST00000384060 104 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-356P-201ENST00000384140 107 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 RNU6-837P-201ENST00000391056 108 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 HMGN2P8-201ENST00000391458 268 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 LAP3P1-201ENST00000403648 294 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 MIR1252-201ENST00000408861 65 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 RN7SKP111-201ENST00000410349 271 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 RN7SKP289-201ENST00000517244 295 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AC131281.1-201ENST00000522984 164 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AC109446.1-201ENST00000566172 220 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AL451007.1-201ENST00000595491 289 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 BDH2P1-201ENST00000602288 736 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 AL162274.2-201ENST00000614406 332 ntBASIC4.46□□□□□ -1.7
USHBP1Q8N6Y0 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms