Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU6-318P-201ENST00000384283 103 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 RNA5SP213-201ENST00000391031 106 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 MIR548I2-201ENST00000408348 149 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 RPL23AP95-201ENST00000426806 265 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 PHBP16-201ENST00000446318 950 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 RPL30P5-201ENST00000494923 336 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 RN7SKP49-201ENST00000516675 260 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-1282P-201ENST00000516735 96 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-1198P-201ENST00000516904 67 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-1183P-201ENST00000517054 60 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 AC107016.1-201ENST00000550463 337 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 MIR5096-201ENST00000583713 70 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 MIR6820-201ENST00000611508 62 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 AC024581.2-201ENST00000619986 252 ntBASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
UBE3DQ7Z6J8 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-879P-201ENST00000364328 108 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 SNORA56-201ENST00000383966 129 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-140P-201ENST00000384566 108 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 MIR518D-201ENST00000385014 87 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RNU2-20P-201ENST00000410425 191 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AC068287.1-201ENST00000430283 295 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RPS29P17-201ENST00000430795 166 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AC096638.1-201ENST00000444678 216 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RPL30P1-201ENST00000488676 339 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RN7SL810P-201ENST00000493031 276 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-255P-201ENST00000516957 105 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 RN7SKP272-201ENST00000516988 232 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AC024405.2-202ENST00000532731 184 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 MIR4700-201ENST00000578311 74 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 MIR3133-201ENST00000583157 78 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AL356218.2-201ENST00000605264 187 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AC011476.5-201ENST00000615594 130 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 SNX18P1Y-201ENST00000616231 511 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 AC132825.6-201ENST00000638861 357 ntBASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
UBE3DQ7Z6J8 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 RNU1-15P-201ENST00000353977 144 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 RNU1-108P-201ENST00000362556 161 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 Y_RNA.76-201ENST00000362931 109 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 RNU6-774P-201ENST00000363238 107 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 RNU1-32P-201ENST00000363937 159 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 RNA5SP175-201ENST00000364275 119 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 RNY4P28-201ENST00000365281 93 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 SNORD113-1-201ENST00000365321 69 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 MIR32-201ENST00000384965 70 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 Y_RNA.626-201ENST00000411288 95 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AL157831.1-201ENST00000426134 473 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AC011742.1-201ENST00000431448 434 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 RPL37P4-201ENST00000448908 268 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AC073901.1-201ENST00000462471 408 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AC087477.1-201ENST00000465747 340 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 RPS23P1-201ENST00000491662 432 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 UBE2CP3-201ENST00000502715 450 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AC015795.1-201ENST00000513669 327 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 AL023881.1-201ENST00000621088 301 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 U2.21-201ENST00000637295 81 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 MFSD8-242ENST00000641690 4199 ntBASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
UBE3DQ7Z6J8 SRP72P2-201ENST00000344851 1979 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 165 ms