Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 RNU6-80P-201ENST00000384195 107 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 AL592291.1-201ENST00000403830 352 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.41□□□□□ -1.54
RC3H1Q5TC82 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.41□□□□□ -1.54
RC3H1Q5TC82 POLR2KP2-201ENST00000438155 177 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 RPS27AP9-201ENST00000477681 438 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 RPL26P26-201ENST00000480251 434 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 RNU6-927P-201ENST00000516199 100 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 RN7SKP277-201ENST00000516895 283 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.41□□□□□ -1.54
RC3H1Q5TC82 RPL23AP97-201ENST00000568955 471 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 MIR4472-2-201ENST00000582069 67 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 AC008121.1-201ENST00000603244 268 ntBASIC5.41□□□□□ -1.54
RC3H1Q5TC82 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC5.41□□□□□ -1.54
RC3H1Q5TC82 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.41□□□□□ -1.54
RC3H1Q5TC82 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
RC3H1Q5TC82 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 Y_RNA.75-201ENST00000362927 97 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 RNU6-428P-201ENST00000362942 107 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 Y_RNA.238-201ENST00000364441 102 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 Y_RNA.412-201ENST00000384001 104 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 RNA5SP372-201ENST00000390836 115 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AL357075.1-201ENST00000404107 726 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 SNORA11.1-201ENST00000408133 129 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 RNA5SP56-201ENST00000410277 118 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 RPL7AP73-201ENST00000413490 353 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AL445584.1-201ENST00000431451 330 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 TBCAP1-201ENST00000436520 327 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AC009237.7-201ENST00000447357 229 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AC104164.2-201ENST00000496953 495 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 GMPSP1-201ENST00000514075 579 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 RNU6-1234P-201ENST00000516877 103 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 SNORA31.22-201ENST00000517204 135 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AP002001.1-203ENST00000534002 267 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 HMGB1P14-201ENST00000557424 591 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 MIR5685-201ENST00000579080 79 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AL606490.9-201ENST00000603331 271 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AL008718.3-201ENST00000610217 321 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 MIR7151-201ENST00000617477 60 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 AC090617.7-201ENST00000623952 126 ntBASIC5.4□□□□□ -1.54
RC3H1Q5TC82 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
RC3H1Q5TC82 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
RC3H1Q5TC82 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
RC3H1Q5TC82 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
RC3H1Q5TC82 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 SNORA63.4-201ENST00000362763 126 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 RNU6-512P-201ENST00000364438 103 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 RNU6-898P-201ENST00000365627 104 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 SNORA40.19-201ENST00000390846 128 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 RNU6-1025P-201ENST00000410629 104 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AL512844.2-201ENST00000433990 593 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AC009296.1-201ENST00000443146 155 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 IFNA11P-201ENST00000446352 526 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AC016925.1-201ENST00000458303 298 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 CYCTP-201ENST00000504253 315 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 SUMO2P18-201ENST00000518873 252 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AC093591.2-201ENST00000565254 3843 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AC055872.1-201ENST00000570978 278 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 MIR3944-201ENST00000581277 108 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AC006001.4-201ENST00000622243 395 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 AC007546.2-201ENST00000623996 360 ntBASIC5.39□□□□□ -1.55
RC3H1Q5TC82 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
RC3H1Q5TC82 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RC3H1Q5TC82 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RC3H1Q5TC82 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RC3H1Q5TC82 LINC01109-201ENST00000603837 3081 ntBASIC5.38□□□□□ -1.55
RC3H1Q5TC82 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RC3H1Q5TC82 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
RC3H1Q5TC82 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.38□□□□□ -1.55
RC3H1Q5TC82 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.38□□□□□ -1.55
RC3H1Q5TC82 RNA5SP387-201ENST00000364226 106 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms