Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC7.58□□□□□ -1.2
NCBP3Q53F19 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
NCBP3Q53F19 AC112200.1-201ENST00000625015 234 ntBASIC7.58□□□□□ -1.2
NCBP3Q53F19 AC004944.1-201ENST00000517807 3059 ntBASIC7.58□□□□□ -1.2
NCBP3Q53F19 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
NCBP3Q53F19 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NCBP3Q53F19 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NCBP3Q53F19 AC007496.3-201ENST00000624987 3443 ntBASIC7.58□□□□□ -1.2
NCBP3Q53F19 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
NCBP3Q53F19 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NCBP3Q53F19 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
NCBP3Q53F19 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NCBP3Q53F19 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
NCBP3Q53F19 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC7.57□□□□□ -1.2
NCBP3Q53F19 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
NCBP3Q53F19 AL159987.1-201ENST00000347911 293 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 U3.10-201ENST00000364459 214 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 Y_RNA.362-201ENST00000365518 110 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 AL161651.1-201ENST00000440882 223 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 snoU13.29-201ENST00000459370 104 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 AC105137.1-201ENST00000484355 562 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 AC098976.1-201ENST00000513014 541 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC7.57□□□□□ -1.2
NCBP3Q53F19 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC7.57□□□□□ -1.2
NCBP3Q53F19 MIR3129-201ENST00000581095 76 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC7.57□□□□□ -1.2
NCBP3Q53F19 BX005214.3-202ENST00000619809 325 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 5S_rRNA.28-201ENST00000638107 119 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
NCBP3Q53F19 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
NCBP3Q53F19 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
NCBP3Q53F19 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NCBP3Q53F19 PCAT14-202ENST00000627127 3935 ntBASIC7.57□□□□□ -1.2
NCBP3Q53F19 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC7.56□□□□□ -1.2
NCBP3Q53F19 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC7.56□□□□□ -1.2
NCBP3Q53F19 FAM35BP-202ENST00000497389 3337 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NCBP3Q53F19 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
NCBP3Q53F19 RNA5SP189-201ENST00000364920 115 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 MIR181A2-201ENST00000384863 110 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 HIST1H3PS1-201ENST00000404612 417 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 NDUFB1P1-201ENST00000435191 180 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 AC090602.1-201ENST00000469695 252 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 MRPS36P2-201ENST00000512569 299 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 RNU6-113P-201ENST00000516653 101 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 AC021678.3-201ENST00000517893 476 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 AC027419.1-201ENST00000522976 328 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 IGKV3-31-201ENST00000523109 329 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 AP005432.2-201ENST00000608162 586 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 RN7SL544P-201ENST00000617232 284 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 RN7SL763P-201ENST00000620922 284 ntBASIC7.56□□□□□ -1.2
NCBP3Q53F19 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC7.56□□□□□ -1.2
NCBP3Q53F19 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NCBP3Q53F19 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC7.56□□□□□ -1.2
NCBP3Q53F19 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC7.56□□□□□ -1.2
NCBP3Q53F19 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
NCBP3Q53F19 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NCBP3Q53F19 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NCBP3Q53F19 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NCBP3Q53F19 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NCBP3Q53F19 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NCBP3Q53F19 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 Y_RNA.342-201ENST00000365352 113 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 RNA5SP30-201ENST00000365552 115 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 MIR130A-201ENST00000385274 89 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 AC068339.1-201ENST00000526965 141 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 HSPE1P5-201ENST00000561489 272 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 RPL23AP97-201ENST00000568955 471 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 MIR2681-201ENST00000581814 105 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 AC002064.3-201ENST00000623448 346 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 AC125257.1-201ENST00000560400 2930 ntBASIC7.55□□□□□ -1.2
NCBP3Q53F19 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
NCBP3Q53F19 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NCBP3Q53F19 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
NCBP3Q53F19 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC7.54□□□□□ -1.2
NCBP3Q53F19 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC7.54□□□□□ -1.2
NCBP3Q53F19 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC7.54□□□□□ -1.2
NCBP3Q53F19 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
NCBP3Q53F19 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
NCBP3Q53F19 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC7.54□□□□□ -1.2
NCBP3Q53F19 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC7.54□□□□□ -1.2
NCBP3Q53F19 AC058791.1-201ENST00000608412 3198 ntBASIC7.54□□□□□ -1.2
NCBP3Q53F19 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC7.54□□□□□ -1.2
NCBP3Q53F19 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
NCBP3Q53F19 RNA5SP435-201ENST00000364044 108 ntBASIC7.54□□□□□ -1.2
NCBP3Q53F19 RNA5SP511-201ENST00000410487 115 ntBASIC7.54□□□□□ -1.2
NCBP3Q53F19 AC078918.1-201ENST00000498515 228 ntBASIC7.54□□□□□ -1.2
NCBP3Q53F19 AC005921.1-201ENST00000510589 286 ntBASIC7.54□□□□□ -1.2
NCBP3Q53F19 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC7.54□□□□□ -1.2
NCBP3Q53F19 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
NCBP3Q53F19 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC7.53□□□□□ -1.2
NCBP3Q53F19 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms