Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 HSBP1P1-201ENST00000555205 166 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AL160236.1-201ENST00000556317 195 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AL359212.1-201ENST00000556608 614 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC012557.2-201ENST00000605919 418 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 RNU6-91P-201ENST00000607774 107 ntBASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.47□□□□□ -2.33
CHD9Q3L8U1 RNU6-733P-201ENST00000410759 104 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 NDUFS5P4-201ENST00000412983 318 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AL160275.3-201ENST00000423876 471 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 FAM204CP-201ENST00000424489 642 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC015724.1-201ENST00000478577 156 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC139453.3-201ENST00000493276 369 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 RNU6-758P-201ENST00000516292 89 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 RNU4-18P-201ENST00000516751 149 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 RRN3P3-201ENST00000549207 578 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC008751.2-201ENST00000597885 980 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AL020997.3-201ENST00000602843 359 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC080013.4-201ENST00000607624 649 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC099842.1-201ENST00000619919 596 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC068057.2-201ENST00000624047 895 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 SNORA9.1-201ENST00000362412 131 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 snoU13.9-201ENST00000458927 103 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 TPT1P8-201ENST00000510120 555 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 RNU6-488P-201ENST00000515918 99 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 RNU4-57P-201ENST00000515980 135 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 ANKRD36BP2-206ENST00000575193 1245 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AC010620.1-201ENST00000601088 1102 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AL121652.1-201ENST00000608851 448 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC0.46□□□□□ -2.34
CHD9Q3L8U1 AL078604.3-201ENST00000615580 211 ntBASIC0.46□□□□□ -2.34
CHD9Q3L8U1 MIR26B-201ENST00000362251 77 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 RNU6-270P-201ENST00000364131 105 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 RNU4-67P-201ENST00000364569 141 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 GTF2IP20-201ENST00000431663 360 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AL353706.1-201ENST00000436728 494 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 RPL39P29-201ENST00000447779 157 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 PRELID3BP1-201ENST00000457142 540 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC004217.3-201ENST00000551552 878 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AL139344.1-201ENST00000605228 195 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC009233.1-201ENST00000616477 371 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC091965.5-201ENST00000624785 342 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 MTCO1P18-201ENST00000455518 1419 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 RNU6-43P-201ENST00000384302 107 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AL121978.1-201ENST00000402778 359 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 SFR1P2-201ENST00000421841 730 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AL512844.2-201ENST00000433990 593 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 DDX3P2-201ENST00000446138 111 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC012414.6-201ENST00000568241 401 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC090079.2-201ENST00000575289 768 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 BNIP3P24-201ENST00000593398 557 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 AC006213.5-201ENST00000619673 288 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 U6.107-201ENST00000637108 79 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 Z75746.1-201ENST00000440243 2080 ntBASIC0.45□□□□□ -2.34
CHD9Q3L8U1 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.45□□□□□ -2.34
CHD9Q3L8U1 SNORA51.6-201ENST00000384151 125 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 RNA5SP212-201ENST00000391223 107 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC006461.1-201ENST00000412637 326 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC119618.1-201ENST00000434191 222 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 RNU5A-7P-201ENST00000515979 116 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC125611.1-201ENST00000549563 229 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 AP001485.1-201ENST00000604799 199 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 ZNF663P-202ENST00000641770 1131 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.44□□□□□ -2.34
CHD9Q3L8U1 LINC02555-201ENST00000563933 1951 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 RNU5E-1-201ENST00000362477 120 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 RNU6-271P-201ENST00000363858 105 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 MIR135A2-201ENST00000384854 100 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 MIR30A-201ENST00000385092 71 ntBASIC0.44□□□□□ -2.34
CHD9Q3L8U1 RNA5SP63-201ENST00000391225 112 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms