Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 PTGES3P4-201ENST00000426243 356 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AC016691.1-201ENST00000441321 413 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC1.36□□□□□ -2.19
SCN9AQ15858 AL441985.1-201ENST00000457727 251 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.36□□□□□ -2.19
SCN9AQ15858 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.36□□□□□ -2.19
SCN9AQ15858 MTND4LP25-201ENST00000570218 163 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 ROCK1P1-201ENST00000573767 549 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 UBE2L4-201ENST00000587688 464 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AC097468.3-201ENST00000607956 456 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.36□□□□□ -2.19
SCN9AQ15858 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.36□□□□□ -2.19
SCN9AQ15858 AL390862.1-201ENST00000635467 1469 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 UBE2Q2P1-202ENST00000354771 883 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 RNA5SP465-201ENST00000391195 109 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AC007327.1-201ENST00000447461 264 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.36□□□□□ -2.19
SCN9AQ15858 RNA5SP112-201ENST00000515937 99 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.36□□□□□ -2.19
SCN9AQ15858 AL121821.2-201ENST00000556081 394 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AL359212.1-201ENST00000556608 614 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC1.36□□□□□ -2.19
SCN9AQ15858 BNIP3P26-201ENST00000600827 554 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 RPL21P136-201ENST00000605378 396 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 DUSP12P1-201ENST00000612874 516 ntBASIC1.36□□□□□ -2.19
SCN9AQ15858 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.36□□□□□ -2.19
SCN9AQ15858 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.36□□□□□ -2.19
SCN9AQ15858 RNU6-288P-201ENST00000363690 104 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 RNU4-42P-201ENST00000364738 142 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 SNORA18.2-201ENST00000383865 132 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 RNU1-39P-201ENST00000383897 165 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 RNU1-148P-201ENST00000384472 162 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 MIR1305-201ENST00000408300 86 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 MIR320C1-201ENST00000408566 88 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 RNU2-49P-201ENST00000410666 184 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 MTCO1P53-201ENST00000441633 699 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 KATNBL1P3-201ENST00000443475 909 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 MTATP6P30-201ENST00000443540 664 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 AL357134.1-201ENST00000445848 426 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC1.35□□□□□ -2.19
SCN9AQ15858 AC007395.1-201ENST00000451333 677 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC1.35□□□□□ -2.19
SCN9AQ15858 SNORA31.6-201ENST00000516241 130 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.35□□□□□ -2.19
SCN9AQ15858 HSBP1P1-201ENST00000555205 166 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC1.35□□□□□ -2.19
SCN9AQ15858 MIR3198-2-201ENST00000577868 80 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.35□□□□□ -2.19
SCN9AQ15858 AC060771.1-201ENST00000582031 164 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 AP000403.1-201ENST00000603349 851 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 AC123912.5-201ENST00000605470 343 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 U4atac.1-201ENST00000618345 95 ntBASIC1.35□□□□□ -2.19
SCN9AQ15858 RNU6-744P-201ENST00000365557 107 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 RNU6-1316P-201ENST00000384242 108 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 MIR95-201ENST00000385072 81 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 MIR758-201ENST00000390227 88 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 Y_RNA.578-201ENST00000390903 88 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC1.34□□□□□ -2.19
SCN9AQ15858 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC1.34□□□□□ -2.19
SCN9AQ15858 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC1.34□□□□□ -2.19
SCN9AQ15858 FABP5P14-201ENST00000437273 393 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.34□□□□□ -2.19
SCN9AQ15858 AC005094.1-201ENST00000440420 368 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 EEF1E1P1-201ENST00000446998 430 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 KLF3P2-201ENST00000465138 268 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC1.34□□□□□ -2.19
SCN9AQ15858 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.19
SCN9AQ15858 AC113347.3-201ENST00000509113 148 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 MIR892C-201ENST00000516410 77 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.34□□□□□ -2.19
SCN9AQ15858 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC1.34□□□□□ -2.19
SCN9AQ15858 AC022880.1-201ENST00000534017 973 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.34□□□□□ -2.19
SCN9AQ15858 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.34□□□□□ -2.19
SCN9AQ15858 AC006270.3-201ENST00000605967 1036 ntBASIC1.34□□□□□ -2.19
SCN9AQ15858 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.34□□□□□ -2.19
SCN9AQ15858 RNU6-342P-201ENST00000384521 104 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC1.34□□□□□ -2.2
SCN9AQ15858 MIR1285-1-201ENST00000408593 84 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 MTCO3P46-201ENST00000425787 232 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.34□□□□□ -2.2
SCN9AQ15858 KATNBL1P6-201ENST00000453433 915 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 RPL12P25-201ENST00000455592 494 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 AC112771.1-201ENST00000463581 102 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 DYNLL1P5-201ENST00000467158 270 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 HMGB1P36-201ENST00000487709 576 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 HMGB1P28-201ENST00000507778 552 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 AC098591.2-201ENST00000510152 315 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 FABP5P5-201ENST00000515537 406 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 RNU6-581P-201ENST00000516214 105 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 AC109329.1-201ENST00000518744 317 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC1.34□□□□□ -2.2
SCN9AQ15858 DUXAP5-201ENST00000529668 529 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC1.34□□□□□ -2.2
SCN9AQ15858 MIR4782-201ENST00000577987 79 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 MTCYBP22-201ENST00000603788 447 ntBASIC1.34□□□□□ -2.2
SCN9AQ15858 AL158211.2-201ENST00000607282 395 ntBASIC1.34□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms