Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 HMGB1P50-201ENST00000605814 607 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 AL138825.1-201ENST00000618587 192 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 AP003355.3-201ENST00000623465 114 ntBASIC3.56□□□□□ -1.84
COL4A3Q01955 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL4A3Q01955 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
COL4A3Q01955 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL4A3Q01955 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A3Q01955 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.56□□□□□ -1.84
COL4A3Q01955 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A3Q01955 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL4A3Q01955 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
COL4A3Q01955 Y_RNA.222-201ENST00000364264 102 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 RNU6-790P-201ENST00000384479 105 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 SNORA48.8-201ENST00000391324 134 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 RNU2-43P-201ENST00000410306 190 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 RNU6-174P-201ENST00000410406 106 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.55□□□□□ -1.84
COL4A3Q01955 RPS20P1-201ENST00000434853 354 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AC073910.1-201ENST00000445047 438 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 SUMO1P2-201ENST00000452524 304 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 MTCO3P8-201ENST00000453691 755 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 RPL23AP31-201ENST00000456160 467 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 SNORA31.3-201ENST00000516029 96 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A3Q01955 SNRPGP16-201ENST00000533275 226 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 MIR5004-201ENST00000579078 107 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AC141273.2-201ENST00000618989 130 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AC078938.1-201ENST00000620993 318 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AL031601.2-202ENST00000622650 282 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A3Q01955 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A3Q01955 OTUD4P1-201ENST00000237841 3067 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC3.55□□□□□ -1.84
COL4A3Q01955 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC3.55□□□□□ -1.84
COL4A3Q01955 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
COL4A3Q01955 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.55□□□□□ -1.84
COL4A3Q01955 AL022322.2-201ENST00000624072 20397 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A3Q01955 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC3.55□□□□□ -1.84
COL4A3Q01955 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A3Q01955 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A3Q01955 RNU4-70P-201ENST00000384579 139 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 HMGN2P8-201ENST00000391458 268 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AL445529.1-201ENST00000398713 389 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 RPL21P1-201ENST00000399532 476 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 RNU6-712P-201ENST00000410558 100 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 COTL1P1-201ENST00000422309 375 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AL158071.1-201ENST00000430315 461 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A3Q01955 AC022447.4-201ENST00000504053 364 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 VN1R104P-201ENST00000505115 1009 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AC023157.2-201ENST00000540596 141 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.55□□□□□ -1.84
COL4A3Q01955 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.55□□□□□ -1.84
COL4A3Q01955 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.55□□□□□ -1.84
COL4A3Q01955 OR1M4P-201ENST00000589199 287 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 AL162274.2-201ENST00000614406 332 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 U73479.1-201ENST00000618062 168 ntBASIC3.55□□□□□ -1.84
COL4A3Q01955 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A3Q01955 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
COL4A3Q01955 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL4A3Q01955 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.54□□□□□ -1.84
COL4A3Q01955 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A3Q01955 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
COL4A3Q01955 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.54□□□□□ -1.84
COL4A3Q01955 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.54□□□□□ -1.84
COL4A3Q01955 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A3Q01955 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A3Q01955 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC3.54□□□□□ -1.84
COL4A3Q01955 Y_RNA.551-201ENST00000384661 102 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 RNU6-817P-201ENST00000391083 104 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 MTHFD2P2-201ENST00000407725 247 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 RNA5SP229-201ENST00000410809 99 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 AL030996.1-201ENST00000411430 235 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.54□□□□□ -1.84
COL4A3Q01955 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.54□□□□□ -1.84
COL4A3Q01955 SNORD127-201ENST00000458892 86 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 RNU6-1132P-201ENST00000459214 107 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 RN7SL93P-201ENST00000463035 293 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 AC093852.1-201ENST00000503587 266 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 AC105758.1-201ENST00000506038 399 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.54□□□□□ -1.84
COL4A3Q01955 AC040926.1-201ENST00000530195 238 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 OR5D17P-201ENST00000531492 978 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL4A3Q01955 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.54□□□□□ -1.84
COL4A3Q01955 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.54□□□□□ -1.84
COL4A3Q01955 AC109446.1-201ENST00000566172 220 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 AL451007.1-201ENST00000595491 289 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 SNORD39.4-201ENST00000620099 78 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A3Q01955 ZNF72P-201ENST00000425869 1908 ntBASIC3.54□□□□□ -1.84
COL4A3Q01955 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
COL4A3Q01955 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.54□□□□□ -1.84
COL4A3Q01955 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.54□□□□□ -1.84
COL4A3Q01955 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.53□□□□□ -1.84
COL4A3Q01955 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL4A3Q01955 MIR449A-201ENST00000362113 91 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 Y_RNA.48-201ENST00000362710 103 ntBASIC3.53□□□□□ -1.84
COL4A3Q01955 Y_RNA.106-201ENST00000363189 100 ntBASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms