Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.55□□□□□ -2
LMO4P61968 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.55□□□□□ -2
LMO4P61968 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LMO4P61968 AC084781.2-201ENST00000615568 161 ntBASIC2.55□□□□□ -2
LMO4P61968 AC027309.3-201ENST00000623419 351 ntBASIC2.55□□□□□ -2
LMO4P61968 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.55□□□□□ -2
LMO4P61968 AL137790.1-201ENST00000634283 177 ntBASIC2.55□□□□□ -2
LMO4P61968 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
LMO4P61968 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.55□□□□□ -2
LMO4P61968 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LMO4P61968 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LMO4P61968 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.54□□□□□ -2
LMO4P61968 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LMO4P61968 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LMO4P61968 RNU6-1287P-201ENST00000362914 107 ntBASIC2.54□□□□□ -2
LMO4P61968 RNU6-1284P-201ENST00000363701 100 ntBASIC2.54□□□□□ -2
LMO4P61968 RNU6-7-201ENST00000364784 107 ntBASIC2.54□□□□□ -2
LMO4P61968 RNU6-8-201ENST00000365467 107 ntBASIC2.54□□□□□ -2
LMO4P61968 SMIM11P1-201ENST00000369586 178 ntBASIC2.54□□□□□ -2
LMO4P61968 RNU6-1013P-201ENST00000384180 107 ntBASIC2.54□□□□□ -2
LMO4P61968 SNORA36C-201ENST00000384289 132 ntBASIC2.54□□□□□ -2
LMO4P61968 RNU6-1060P-201ENST00000384664 107 ntBASIC2.54□□□□□ -2
LMO4P61968 MIR559-201ENST00000385188 96 ntBASIC2.54□□□□□ -2
LMO4P61968 RNU6-550P-201ENST00000391057 101 ntBASIC2.54□□□□□ -2
LMO4P61968 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LMO4P61968 RNU4-46P-201ENST00000410818 138 ntBASIC2.54□□□□□ -2
LMO4P61968 RNU6-1304P-201ENST00000411374 106 ntBASIC2.54□□□□□ -2
LMO4P61968 RPL21P24-201ENST00000413752 448 ntBASIC2.54□□□□□ -2
LMO4P61968 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.54□□□□□ -2
LMO4P61968 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC2.54□□□□□ -2
LMO4P61968 AC009237.8-201ENST00000445492 379 ntBASIC2.54□□□□□ -2
LMO4P61968 AL162389.1-201ENST00000449233 177 ntBASIC2.54□□□□□ -2
LMO4P61968 Y_RNA.631-201ENST00000459607 101 ntBASIC2.54□□□□□ -2
LMO4P61968 RN7SL330P-201ENST00000469709 307 ntBASIC2.54□□□□□ -2
LMO4P61968 RPL7P43-201ENST00000478876 753 ntBASIC2.54□□□□□ -2
LMO4P61968 RPL21P93-201ENST00000480465 489 ntBASIC2.54□□□□□ -2
LMO4P61968 AC027575.1-201ENST00000481064 460 ntBASIC2.54□□□□□ -2
LMO4P61968 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.54□□□□□ -2
LMO4P61968 RBBP4P6-201ENST00000508098 202 ntBASIC2.54□□□□□ -2
LMO4P61968 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.54□□□□□ -2
LMO4P61968 RN7SKP60-201ENST00000516985 239 ntBASIC2.54□□□□□ -2
LMO4P61968 Y_RNA.711-201ENST00000516993 102 ntBASIC2.54□□□□□ -2
LMO4P61968 AC090136.1-201ENST00000520009 240 ntBASIC2.54□□□□□ -2
LMO4P61968 AC100870.1-201ENST00000522035 505 ntBASIC2.54□□□□□ -2
LMO4P61968 AP000889.2-201ENST00000532684 490 ntBASIC2.54□□□□□ -2
LMO4P61968 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.54□□□□□ -2
LMO4P61968 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.54□□□□□ -2
LMO4P61968 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.54□□□□□ -2
LMO4P61968 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.54□□□□□ -2
LMO4P61968 AC092747.3-201ENST00000603769 301 ntBASIC2.54□□□□□ -2
LMO4P61968 SNRPGP17-201ENST00000603780 214 ntBASIC2.54□□□□□ -2
LMO4P61968 DPPA3P3-201ENST00000603842 430 ntBASIC2.54□□□□□ -2
LMO4P61968 AP000942.4-201ENST00000604811 241 ntBASIC2.54□□□□□ -2
LMO4P61968 AC080078.3-201ENST00000605407 463 ntBASIC2.54□□□□□ -2
LMO4P61968 AC124303.1-201ENST00000605703 360 ntBASIC2.54□□□□□ -2
LMO4P61968 Z82243.1-201ENST00000609432 473 ntBASIC2.54□□□□□ -2
LMO4P61968 DUSP12P1-201ENST00000612874 516 ntBASIC2.54□□□□□ -2
LMO4P61968 TUG1_2.1-201ENST00000614234 87 ntBASIC2.54□□□□□ -2
LMO4P61968 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.54□□□□□ -2
LMO4P61968 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.54□□□□□ -2
LMO4P61968 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC2.54□□□□□ -2
LMO4P61968 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.54□□□□□ -2
LMO4P61968 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.54□□□□□ -2
LMO4P61968 AC103710.2-202ENST00000641454 2853 ntBASIC2.54□□□□□ -2
LMO4P61968 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.53□□□□□ -2
LMO4P61968 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LMO4P61968 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.53□□□□□ -2
LMO4P61968 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
LMO4P61968 AC005183.1-201ENST00000603687 1979 ntBASIC2.53□□□□□ -2
LMO4P61968 AP002088.1-201ENST00000382740 395 ntBASIC2.53□□□□□ -2
LMO4P61968 Y_RNA.510-201ENST00000384511 114 ntBASIC2.53□□□□□ -2
LMO4P61968 AC110754.1-201ENST00000399740 601 ntBASIC2.53□□□□□ -2
LMO4P61968 RN7SKP158-201ENST00000410453 326 ntBASIC2.53□□□□□ -2
LMO4P61968 RNU6-370P-201ENST00000411008 104 ntBASIC2.53□□□□□ -2
LMO4P61968 POLHP1-201ENST00000411806 470 ntBASIC2.53□□□□□ -2
LMO4P61968 AC245054.2-201ENST00000415639 319 ntBASIC2.53□□□□□ -2
LMO4P61968 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.53□□□□□ -2
LMO4P61968 NDUFB4P7-201ENST00000423198 363 ntBASIC2.53□□□□□ -2
LMO4P61968 RAC1P6-201ENST00000423911 575 ntBASIC2.53□□□□□ -2
LMO4P61968 Z82205.1-201ENST00000428456 297 ntBASIC2.53□□□□□ -2
LMO4P61968 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.53□□□□□ -2
LMO4P61968 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC2.53□□□□□ -2
LMO4P61968 AC107399.1-201ENST00000451226 265 ntBASIC2.53□□□□□ -2
LMO4P61968 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.53□□□□□ -2
LMO4P61968 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.53□□□□□ -2
LMO4P61968 HMGN1P18-201ENST00000457642 277 ntBASIC2.53□□□□□ -2
LMO4P61968 RNU7-152P-201ENST00000458982 64 ntBASIC2.53□□□□□ -2
LMO4P61968 AC008481.1-201ENST00000463278 396 ntBASIC2.53□□□□□ -2
LMO4P61968 AC010401.1-201ENST00000463867 348 ntBASIC2.53□□□□□ -2
LMO4P61968 AC130509.1-201ENST00000464158 433 ntBASIC2.53□□□□□ -2
LMO4P61968 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.53□□□□□ -2
LMO4P61968 TRBVA-201ENST00000498804 316 ntBASIC2.53□□□□□ -2
LMO4P61968 RNU6-685P-201ENST00000517088 95 ntBASIC2.53□□□□□ -2
LMO4P61968 SCARNA20.6-201ENST00000517251 106 ntBASIC2.53□□□□□ -2
LMO4P61968 NDUFB9P3-201ENST00000521269 501 ntBASIC2.53□□□□□ -2
LMO4P61968 CASP1P1-201ENST00000526345 212 ntBASIC2.53□□□□□ -2
LMO4P61968 APOOP3-201ENST00000536787 586 ntBASIC2.53□□□□□ -2
LMO4P61968 AC011602.1-201ENST00000546484 331 ntBASIC2.53□□□□□ -2
LMO4P61968 OR11H5P-201ENST00000554039 926 ntBASIC2.53□□□□□ -2
LMO4P61968 OR4H12P-201ENST00000556269 907 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms