Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HMGB1P18-201ENST00000438801 619 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 MTND4P25-201ENST00000441039 533 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA1P55317 RPL7P12-201ENST00000446719 750 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA1P55317 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA1P55317 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA1P55317 DYNLL1P5-201ENST00000467158 270 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 RPL39P36-201ENST00000490784 156 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA1P55317 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC1.52□□□□□ -2.17
FOXA1P55317 AC020699.1-201ENST00000505161 445 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
FOXA1P55317 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA1P55317 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA1P55317 RNU6-1183P-201ENST00000517054 60 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 RNU6-1003P-201ENST00000517099 105 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA1P55317 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC1.52□□□□□ -2.17
FOXA1P55317 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.52□□□□□ -2.17
FOXA1P55317 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA1P55317 ARL2BPP2-201ENST00000550907 489 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
FOXA1P55317 AL354943.1-201ENST00000572103 781 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 AP001004.1-201ENST00000582468 324 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.52□□□□□ -2.17
FOXA1P55317 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.52□□□□□ -2.17
FOXA1P55317 AP000860.1-201ENST00000605250 559 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 TUSC7.1-201ENST00000610969 165 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 AC022960.3-201ENST00000619794 441 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 AC006026.1-201ENST00000444025 1803 ntBASIC1.52□□□□□ -2.17
FOXA1P55317 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA1P55317 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
FOXA1P55317 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA1P55317 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
FOXA1P55317 RNU6-19P-201ENST00000384718 107 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 MIR320A-201ENST00000385302 82 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 RNU6-817P-201ENST00000391083 104 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 FCF1P10-201ENST00000407590 479 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 RNU2-36P-201ENST00000410361 191 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 RPS12P24-201ENST00000412619 387 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 BX510359.4-201ENST00000423750 193 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 PTGES3P4-201ENST00000426243 356 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA1P55317 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC1.51□□□□□ -2.17
FOXA1P55317 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 FABP5P14-201ENST00000437273 393 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AL354941.1-201ENST00000438600 464 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 GDI2P2-201ENST00000445131 608 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 AC092001.1-201ENST00000453012 261 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 AL441985.1-201ENST00000457727 251 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 MTND1P3-201ENST00000484956 952 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 FAM92A1P2-202ENST00000504766 877 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 TPT1P8-201ENST00000510120 555 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 AC116347.2-201ENST00000514912 523 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 RNA5SP458-201ENST00000516188 119 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 RNU6-581P-201ENST00000516214 105 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 MIR892C-201ENST00000516410 77 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 RNU6-143P-201ENST00000516942 93 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.51□□□□□ -2.17
FOXA1P55317 MTND2P32-201ENST00000521584 1038 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 AC090888.2-201ENST00000559765 1144 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 MIR4255-201ENST00000579351 72 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.51□□□□□ -2.17
FOXA1P55317 BNIP3P9-201ENST00000603714 553 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AC011458.1-201ENST00000604034 617 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AC018714.1-201ENST00000605028 208 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AC069294.1-201ENST00000608397 350 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 uc_338.14-201ENST00000613162 166 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AL589994.2-201ENST00000621124 579 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 AC025048.6-202ENST00000627667 438 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC1.51□□□□□ -2.17
FOXA1P55317 Z99571.1-201ENST00000636677 394 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 U6.99-201ENST00000637524 83 ntBASIC1.51□□□□□ -2.17
FOXA1P55317 MTND5P10-201ENST00000603719 1809 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 RNU1-17P-201ENST00000363022 152 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 RNA5SP125-201ENST00000364843 120 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 SMIM11P1-201ENST00000369586 178 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 MIR1323-201ENST00000408090 73 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 RNU2-62P-201ENST00000410868 191 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 USP9YP6-201ENST00000413550 854 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 OR51A5P-201ENST00000415429 942 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.5□□□□□ -2.17
FOXA1P55317 AL353777.1-201ENST00000425552 326 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.5□□□□□ -2.17
FOXA1P55317 AC093106.2-201ENST00000428212 385 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 IFNA20P-201ENST00000436840 528 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC004383.1-201ENST00000438135 289 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 BRK1P2-201ENST00000442875 223 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AL606662.1-201ENST00000445763 553 ntBASIC1.5□□□□□ -2.17
FOXA1P55317 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms