Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC009963.1-201ENST00000417265 157 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.41□□□□□ -2.02
PTPN4P29074 PTGES3P4-201ENST00000426243 356 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 ISCA1P6-201ENST00000427740 390 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.41□□□□□ -2.02
PTPN4P29074 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.41□□□□□ -2.02
PTPN4P29074 AL161651.1-201ENST00000440882 223 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 MTCO1P19-201ENST00000443487 500 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC244505.5-201ENST00000443639 207 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC011753.1-201ENST00000451001 220 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 MRPL42P6-201ENST00000486397 371 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC109927.2-201ENST00000506416 303 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.41□□□□□ -2.02
PTPN4P29074 AC117522.2-201ENST00000510049 657 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.41□□□□□ -2.02
PTPN4P29074 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.41□□□□□ -2.02
PTPN4P29074 RN7SKP24-201ENST00000515888 284 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 RNA5SP320-201ENST00000516263 124 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 Vault.3-201ENST00000516676 95 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 RNU6-914P-201ENST00000516749 109 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AP000873.5-201ENST00000533906 236 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC010186.2-204ENST00000537668 439 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AL157871.3-201ENST00000557231 293 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.41□□□□□ -2.02
PTPN4P29074 MIR1273C-201ENST00000578669 77 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC104984.5-201ENST00000586878 94 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC040904.1-201ENST00000590850 223 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 RSL24D1P11-201ENST00000591045 491 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC064872.1-201ENST00000604823 1072 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AC069294.1-201ENST00000608397 350 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 AL133173.2-201ENST00000614270 90 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 Z99571.1-201ENST00000636677 394 ntBASIC2.41□□□□□ -2.02
PTPN4P29074 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
PTPN4P29074 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.41□□□□□ -2.02
PTPN4P29074 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.02
PTPN4P29074 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
PTPN4P29074 RNU6-169P-201ENST00000365336 107 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.4□□□□□ -2.03
PTPN4P29074 RNU6-748P-201ENST00000384648 107 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 SNORA41-201ENST00000384675 132 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 MIR144-201ENST00000384886 86 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 MIR147B-201ENST00000390185 80 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 MIR1261-201ENST00000408659 82 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.4□□□□□ -2.03
PTPN4P29074 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.4□□□□□ -2.03
PTPN4P29074 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.4□□□□□ -2.03
PTPN4P29074 MTND3P17-201ENST00000416968 344 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 RPL23AP30-201ENST00000432419 501 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AL353706.1-201ENST00000436728 494 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AC073614.1-201ENST00000438690 650 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 MTND1P27-201ENST00000451117 902 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.4□□□□□ -2.03
PTPN4P29074 AC080013.2-201ENST00000460866 323 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AC117522.1-201ENST00000509821 380 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 RNU6-1183P-201ENST00000517054 60 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.4□□□□□ -2.03
PTPN4P29074 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC2.4□□□□□ -2.03
PTPN4P29074 LINC00933-203ENST00000559812 219 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 MIR4765-201ENST00000585007 77 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AL139286.2-201ENST00000606838 396 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AC097065.2-201ENST00000608159 533 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 AC087241.4-201ENST00000612441 480 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.4□□□□□ -2.03
PTPN4P29074 AC090582.1-201ENST00000636321 199 ntBASIC2.4□□□□□ -2.03
PTPN4P29074 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
PTPN4P29074 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.39□□□□□ -2.03
PTPN4P29074 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PTPN4P29074 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PTPN4P29074 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PTPN4P29074 Y_RNA.22-201ENST00000362492 102 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 Y_RNA.33-201ENST00000362591 102 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 MIR558-201ENST00000384920 94 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 MIR218-1-201ENST00000384999 110 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 RNU6-1328P-201ENST00000410938 106 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.39□□□□□ -2.03
PTPN4P29074 C1DP2-201ENST00000418167 426 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 FABP5P14-201ENST00000437273 393 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 AL078601.1-201ENST00000444542 271 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 AL031659.1-201ENST00000447075 539 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.39□□□□□ -2.03
PTPN4P29074 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC2.39□□□□□ -2.03
PTPN4P29074 RPL22P13-201ENST00000493291 347 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.39□□□□□ -2.03
PTPN4P29074 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PTPN4P29074 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.39□□□□□ -2.03
PTPN4P29074 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.39□□□□□ -2.03
PTPN4P29074 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.39□□□□□ -2.03
PTPN4P29074 ADI1P3-201ENST00000549509 470 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 AL121821.2-201ENST00000556081 394 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC2.39□□□□□ -2.03
PTPN4P29074 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC2.39□□□□□ -2.03
PTPN4P29074 MIR3913-1-201ENST00000577744 102 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PTPN4P29074 NBR2-204ENST00000587322 63 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 RN7SKP299-201ENST00000606679 301 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 DLEU2_1.1-201ENST00000612089 120 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 DLEU2_1.2-201ENST00000614667 120 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 MIR6134-201ENST00000617606 109 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 AC009509.4-201ENST00000619202 509 ntBASIC2.39□□□□□ -2.03
PTPN4P29074 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms