Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AL445305.1-201ENST00000432577 575 ntBASIC0.66□□□□□ -2.3
TNFP01375 AC245047.4-201ENST00000433189 144 ntBASIC0.66□□□□□ -2.3
TNFP01375 AL353706.1-201ENST00000436728 494 ntBASIC0.66□□□□□ -2.3
TNFP01375 MTCO1P44-201ENST00000441935 243 ntBASIC0.66□□□□□ -2.3
TNFP01375 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC0.66□□□□□ -2.3
TNFP01375 RNU6-1132P-201ENST00000459214 107 ntBASIC0.66□□□□□ -2.3
TNFP01375 AC092991.1-201ENST00000477176 376 ntBASIC0.66□□□□□ -2.3
TNFP01375 AC092436.3-201ENST00000511788 257 ntBASIC0.66□□□□□ -2.3
TNFP01375 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.66□□□□□ -2.3
TNFP01375 AC104997.1-201ENST00000519761 717 ntBASIC0.66□□□□□ -2.3
TNFP01375 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.66□□□□□ -2.3
TNFP01375 AC004812.1-201ENST00000540773 146 ntBASIC0.66□□□□□ -2.3
TNFP01375 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.66□□□□□ -2.3
TNFP01375 AL713866.2-201ENST00000603579 219 ntBASIC0.66□□□□□ -2.3
TNFP01375 DUXAP11-201ENST00000603858 526 ntBASIC0.66□□□□□ -2.3
TNFP01375 AF129408.1-201ENST00000608767 431 ntBASIC0.66□□□□□ -2.3
TNFP01375 USP12-203ENST00000620323 349 ntTSL 3 BASIC0.66□□□□□ -2.3
TNFP01375 AC091965.5-201ENST00000624785 342 ntBASIC0.66□□□□□ -2.3
TNFP01375 AL391516.1-201ENST00000554380 2449 ntBASIC0.66□□□□□ -2.3
TNFP01375 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.65□□□□□ -2.3
TNFP01375 Y_RNA.112-201ENST00000363250 102 ntBASIC0.65□□□□□ -2.31
TNFP01375 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
TNFP01375 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.65□□□□□ -2.31
TNFP01375 Z86062.1-201ENST00000406773 777 ntBASIC0.65□□□□□ -2.31
TNFP01375 PPP1R11P2-201ENST00000423543 382 ntBASIC0.65□□□□□ -2.31
TNFP01375 SKA2P1-201ENST00000425592 390 ntBASIC0.65□□□□□ -2.31
TNFP01375 RPL31P54-201ENST00000429803 370 ntBASIC0.65□□□□□ -2.31
TNFP01375 UBE2V2P3-201ENST00000433562 437 ntBASIC0.65□□□□□ -2.31
TNFP01375 AL441985.1-201ENST00000457727 251 ntBASIC0.65□□□□□ -2.31
TNFP01375 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.65□□□□□ -2.31
TNFP01375 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC0.65□□□□□ -2.31
TNFP01375 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC0.65□□□□□ -2.31
TNFP01375 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC0.65□□□□□ -2.31
TNFP01375 AC073544.2-201ENST00000601155 540 ntBASIC0.65□□□□□ -2.31
TNFP01375 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.65□□□□□ -2.31
TNFP01375 PVT1_3.1-201ENST00000620853 95 ntBASIC0.65□□□□□ -2.31
TNFP01375 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.65□□□□□ -2.31
TNFP01375 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
TNFP01375 Y_RNA.40-201ENST00000362645 93 ntBASIC0.64□□□□□ -2.31
TNFP01375 SNORA29-201ENST00000384183 140 ntBASIC0.64□□□□□ -2.31
TNFP01375 MIR515-2-201ENST00000384883 83 ntBASIC0.64□□□□□ -2.31
TNFP01375 MIR515-1-201ENST00000384884 83 ntBASIC0.64□□□□□ -2.31
TNFP01375 MIR1267-201ENST00000408723 78 ntBASIC0.64□□□□□ -2.31
TNFP01375 MTCYBP38-201ENST00000417160 1123 ntBASIC0.64□□□□□ -2.31
TNFP01375 NCOR1P3-201ENST00000420479 303 ntBASIC0.64□□□□□ -2.31
TNFP01375 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.64□□□□□ -2.31
TNFP01375 AL606490.4-201ENST00000423117 127 ntBASIC0.64□□□□□ -2.31
TNFP01375 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.64□□□□□ -2.31
TNFP01375 PTGES3P1-201ENST00000439531 483 ntBASIC0.64□□□□□ -2.31
TNFP01375 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC0.64□□□□□ -2.31
TNFP01375 PGBD4P5-201ENST00000445958 426 ntBASIC0.64□□□□□ -2.31
TNFP01375 RPL9P9-202ENST00000466501 579 ntBASIC0.64□□□□□ -2.31
TNFP01375 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
TNFP01375 RNU6-405P-201ENST00000516637 110 ntBASIC0.64□□□□□ -2.31
TNFP01375 RNU6-467P-201ENST00000517027 110 ntBASIC0.64□□□□□ -2.31
TNFP01375 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
TNFP01375 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.64□□□□□ -2.31
TNFP01375 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC0.64□□□□□ -2.31
TNFP01375 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.64□□□□□ -2.31
TNFP01375 AC008163.1-202ENST00000636004 2889 ntBASIC0.63□□□□□ -2.31
TNFP01375 RNU6-342P-201ENST00000384521 104 ntBASIC0.63□□□□□ -2.31
TNFP01375 MTND5P15-201ENST00000434246 349 ntBASIC0.63□□□□□ -2.31
TNFP01375 SNRPEP9-201ENST00000436794 238 ntBASIC0.63□□□□□ -2.31
TNFP01375 AC114982.1-201ENST00000469402 321 ntBASIC0.63□□□□□ -2.31
TNFP01375 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC0.63□□□□□ -2.31
TNFP01375 RN7SKP49-201ENST00000516675 260 ntBASIC0.63□□□□□ -2.31
TNFP01375 SNORA31.17-201ENST00000516953 127 ntBASIC0.63□□□□□ -2.31
TNFP01375 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.63□□□□□ -2.31
TNFP01375 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.63□□□□□ -2.31
TNFP01375 LINC00557-201ENST00000563184 1279 ntBASIC0.63□□□□□ -2.31
TNFP01375 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.63□□□□□ -2.31
TNFP01375 AC012213.3-201ENST00000577199 777 ntBASIC0.63□□□□□ -2.31
TNFP01375 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC0.63□□□□□ -2.31
TNFP01375 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC0.63□□□□□ -2.31
TNFP01375 MIR6513-201ENST00000621188 64 ntBASIC0.63□□□□□ -2.31
TNFP01375 AL138713.1-201ENST00000624026 2130 ntBASIC0.63□□□□□ -2.31
TNFP01375 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
TNFP01375 AC092125.1-201ENST00000562568 1995 ntBASIC0.63□□□□□ -2.31
TNFP01375 OR4G2P-201ENST00000328113 903 ntBASIC0.62□□□□□ -2.31
TNFP01375 RNU1-58P-201ENST00000362413 163 ntBASIC0.62□□□□□ -2.31
TNFP01375 RNU6-414P-201ENST00000363705 104 ntBASIC0.62□□□□□ -2.31
TNFP01375 SNORD1A-201ENST00000364968 72 ntBASIC0.62□□□□□ -2.31
TNFP01375 SNORD14D-201ENST00000384390 87 ntBASIC0.62□□□□□ -2.31
TNFP01375 RNU6-1105P-201ENST00000384774 107 ntBASIC0.62□□□□□ -2.31
TNFP01375 SNORA48.1-201ENST00000390879 135 ntBASIC0.62□□□□□ -2.31
TNFP01375 MIR1262-201ENST00000408276 93 ntBASIC0.62□□□□□ -2.31
TNFP01375 PIGFP2-201ENST00000421400 651 ntBASIC0.62□□□□□ -2.31
TNFP01375 CR848007.2-201ENST00000424918 787 ntBASIC0.62□□□□□ -2.31
TNFP01375 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC0.62□□□□□ -2.31
TNFP01375 NANOGP2-201ENST00000435391 727 ntBASIC0.62□□□□□ -2.31
TNFP01375 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
TNFP01375 NDUFA5P7-201ENST00000452914 242 ntBASIC0.62□□□□□ -2.31
TNFP01375 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.62□□□□□ -2.31
TNFP01375 MEMO1P3-201ENST00000459811 302 ntBASIC0.62□□□□□ -2.31
TNFP01375 AC079140.2-201ENST00000506193 142 ntBASIC0.62□□□□□ -2.31
TNFP01375 AC109927.2-201ENST00000506416 303 ntBASIC0.62□□□□□ -2.31
TNFP01375 ACA64.5-201ENST00000516207 127 ntBASIC0.62□□□□□ -2.31
TNFP01375 AC008127.2-201ENST00000549925 1075 ntBASIC0.62□□□□□ -2.31
TNFP01375 AL121821.2-201ENST00000556081 394 ntBASIC0.62□□□□□ -2.31
TNFP01375 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms