Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC016957.1-201ENST00000534895 309 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 ZNF519P2-201ENST00000557032 169 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 HMGB1P33-201ENST00000563485 527 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AC004492.1-201ENST00000607036 742 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AC093788.1-201ENST00000609356 927 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 Z82243.1-201ENST00000609432 473 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 AL591516.1-201ENST00000611326 274 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 SCARNA4-202ENST00000625402 129 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 MIR7515-201ENST00000637837 67 ntBASIC3.11□□□□□ -1.91
HOXC11O43248 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXC11O43248 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXC11O43248 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXC11O43248 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXC11O43248 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXC11O43248 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXC11O43248 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXC11O43248 RNU6-858P-201ENST00000362436 107 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 RNU1-100P-201ENST00000365255 165 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 SNORA69-201ENST00000383895 132 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 RNU6-1127P-201ENST00000384580 107 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 MIR181A1-201ENST00000385026 110 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 RNU6-607P-201ENST00000411283 108 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXC11O43248 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXC11O43248 AC093151.1-201ENST00000427711 313 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 RPS12P18-201ENST00000442381 270 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 PRPS1P1-201ENST00000445305 876 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 RPS29P26-201ENST00000477483 171 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AC011005.2-201ENST00000487324 359 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AC083906.5-201ENST00000503722 328 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AC019235.1-201ENST00000503847 207 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 RNU5F-8P-201ENST00000515941 111 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 SCARNA11.3-201ENST00000517276 130 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AP004607.1-201ENST00000524456 203 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXC11O43248 AC025678.1-201ENST00000567861 338 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 RMST_4.1-201ENST00000616886 107 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 uc_338.34-201ENST00000617467 174 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AC026585.1-201ENST00000619582 524 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AL031601.2-202ENST00000622650 282 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 AC022418.1-201ENST00000624118 445 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXC11O43248 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXC11O43248 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXC11O43248 AL354685.2-201ENST00000448218 1447 ntBASIC3.1□□□□□ -1.91
HOXC11O43248 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXC11O43248 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
HOXC11O43248 AC093831.2-201ENST00000624393 3427 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
HOXC11O43248 RNU6-1180P-201ENST00000364935 107 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 Y_RNA.372-201ENST00000365599 102 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 RNU6-72P-201ENST00000384285 79 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 RNU6-748P-201ENST00000384648 107 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 EEF1A1P41-201ENST00000414667 207 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXC11O43248 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXC11O43248 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXC11O43248 AL669831.1-202ENST00000428504 417 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC236972.1-201ENST00000433225 199 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC244505.4-201ENST00000434905 287 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 GTF2IP13-201ENST00000438487 386 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXC11O43248 SSXP5-201ENST00000443473 287 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXC11O43248 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXC11O43248 RNA5SP401-201ENST00000515920 127 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 RNU1-86P-201ENST00000516108 154 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 SCARNA17.1-201ENST00000516211 143 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 SCARNA17.2-201ENST00000516334 143 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 RNU1-107P-201ENST00000516617 154 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXC11O43248 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXC11O43248 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXC11O43248 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXC11O43248 LRRC37A5P-203ENST00000580181 585 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 MIR3941-201ENST00000582572 103 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 BNIP3P30-201ENST00000601184 574 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AF250324.2-201ENST00000608299 610 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC092954.2-201ENST00000609103 430 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXC11O43248 U2.17-201ENST00000611454 95 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 uc_338.14-201ENST00000613162 166 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC011890.2-201ENST00000613393 294 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 SCARNA17.4-201ENST00000614296 143 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 MIR6852-201ENST00000621699 66 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 AC098679.4-201ENST00000624241 654 ntBASIC3.09□□□□□ -1.91
HOXC11O43248 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXC11O43248 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.09□□□□□ -1.92
HOXC11O43248 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXC11O43248 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXC11O43248 SNORA68.1-201ENST00000364537 132 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 RNU6-384P-201ENST00000364900 104 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 Y_RNA.480-201ENST00000384364 102 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 SNORA26.7-201ENST00000391288 122 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXC11O43248 RNA5SP492-201ENST00000411330 114 ntBASIC3.08□□□□□ -1.92
HOXC11O43248 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXC11O43248 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms