Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 MIR4298-201ENST00000584380 73 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.26□□□□□ -2.05
CLDN3O15551 AC008751.2-201ENST00000597885 980 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AP002360.4-201ENST00000606980 481 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AC027807.2-201ENST00000616099 408 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AC009233.1-201ENST00000616477 371 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 AC104010.1-201ENST00000616889 150 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 U4atac.1-201ENST00000618345 95 ntBASIC2.26□□□□□ -2.05
CLDN3O15551 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
CLDN3O15551 RNU6-500P-201ENST00000362349 107 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 RNA5SP240-201ENST00000365355 128 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.25□□□□□ -2.05
CLDN3O15551 AL079342.1-201ENST00000401460 267 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 SNORD23.1-201ENST00000408212 104 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 RNU4-26P-201ENST00000410270 107 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AC016831.2-201ENST00000417179 352 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AC011233.1-201ENST00000422812 283 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AL031659.1-201ENST00000447075 539 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.25□□□□□ -2.05
CLDN3O15551 AP000797.1-201ENST00000478870 387 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC2.25□□□□□ -2.05
CLDN3O15551 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.25□□□□□ -2.05
CLDN3O15551 IGKV3-31-201ENST00000523109 329 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AP003181.2-201ENST00000528941 181 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.25□□□□□ -2.05
CLDN3O15551 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.25□□□□□ -2.05
CLDN3O15551 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.25□□□□□ -2.05
CLDN3O15551 AC025678.1-201ENST00000567861 338 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AL031775.1-201ENST00000607014 887 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 RNU6-87P-201ENST00000607561 108 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AL359547.2-201ENST00000615810 418 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 AC110994.2-201ENST00000635481 492 ntBASIC2.25□□□□□ -2.05
CLDN3O15551 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.25□□□□□ -2.05
CLDN3O15551 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CLDN3O15551 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CLDN3O15551 CIR1P3-201ENST00000405137 479 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 Y_RNA.608-201ENST00000410647 95 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.24□□□□□ -2.05
CLDN3O15551 HIGD1AP15-201ENST00000416198 280 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 MORF4L1P6-201ENST00000418771 268 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 AC007283.2-201ENST00000424739 197 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 AL593851.1-201ENST00000426171 157 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.24□□□□□ -2.05
CLDN3O15551 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CLDN3O15551 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.24□□□□□ -2.05
CLDN3O15551 ZNF114P1-201ENST00000453500 292 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.24□□□□□ -2.05
CLDN3O15551 CYP2C59P-201ENST00000457790 269 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 RN7SKP265-201ENST00000516448 223 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 OR5B19P-201ENST00000531766 928 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 AC118273.2-201ENST00000532092 465 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.24□□□□□ -2.05
CLDN3O15551 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.24□□□□□ -2.05
CLDN3O15551 AC087045.1-201ENST00000605856 382 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 AC126118.1-201ENST00000607744 628 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
CLDN3O15551 AC017037.3-201ENST00000625016 472 ntBASIC2.24□□□□□ -2.05
CLDN3O15551 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.24□□□□□ -2.05
CLDN3O15551 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CLDN3O15551 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.23□□□□□ -2.05
CLDN3O15551 CASP3-203ENST00000393588 677 ntTSL 4 BASIC2.23□□□□□ -2.05
CLDN3O15551 MIR1261-201ENST00000408659 82 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.23□□□□□ -2.05
CLDN3O15551 AC138623.1-201ENST00000418060 216 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 ELOCP4-201ENST00000420090 333 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 AL160275.3-201ENST00000423876 471 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.23□□□□□ -2.05
CLDN3O15551 RPL7P34-201ENST00000433316 712 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 MTND5P2-201ENST00000442927 1142 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.23□□□□□ -2.05
CLDN3O15551 RPL23AP7-203ENST00000449021 469 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.23□□□□□ -2.05
CLDN3O15551 RNU6-717P-201ENST00000459076 104 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.23□□□□□ -2.05
CLDN3O15551 RNU5B-3P-201ENST00000516601 115 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 RANP3-201ENST00000530970 276 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 CYCSP26-201ENST00000534107 320 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 AC092325.1-201ENST00000566449 554 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 MIR3126-201ENST00000577443 74 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 AL121917.1-203ENST00000605534 577 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 AC096772.1-201ENST00000609146 564 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.23□□□□□ -2.05
CLDN3O15551 AL391262.2-201ENST00000622466 494 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 AC092656.1-203ENST00000624134 423 ntBASIC2.23□□□□□ -2.05
CLDN3O15551 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
CLDN3O15551 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CLDN3O15551 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CLDN3O15551 RNU1-72P-201ENST00000362976 153 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 RNA5SP160-201ENST00000364866 120 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AL139156.1-201ENST00000412785 841 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.22□□□□□ -2.05
CLDN3O15551 MTND1P23-201ENST00000416931 372 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.22□□□□□ -2.05
CLDN3O15551 AL365338.1-201ENST00000422282 858 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.22□□□□□ -2.05
CLDN3O15551 AL161788.1-201ENST00000441805 169 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 AC009238.1-201ENST00000442165 424 ntBASIC2.22□□□□□ -2.05
CLDN3O15551 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CLDN3O15551 AC009237.6-201ENST00000446969 424 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms