Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AC009712.1-201ENST00000564938 316 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 SNRPGP17-201ENST00000603780 214 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AC007363.1-201ENST00000604736 620 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 BCRP9-201ENST00000605312 388 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AC103810.8-201ENST00000607347 118 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AL391813.2-201ENST00000609113 322 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AC068944.2-201ENST00000610373 403 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AC008121.3-201ENST00000618726 433 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 Z99571.1-201ENST00000636677 394 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 AC106858.1-201ENST00000637497 429 ntBASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
TRAV41A0A0B4J266 RNU6-1284P-201ENST00000363701 100 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 AC083875.1-201ENST00000419509 405 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 MTCO2P20-201ENST00000437339 673 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 AL137159.1-201ENST00000452808 512 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 RPL37P6-201ENST00000460682 294 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 AC023813.2-201ENST00000564321 469 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 AL355472.4-201ENST00000610233 626 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 uc_338.5-201ENST00000611839 155 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 AC090970.3-201ENST00000612566 866 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 AL359757.2-201ENST00000624309 274 ntBASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
TRAV41A0A0B4J266 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 RNU5E-1-201ENST00000362477 120 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 RNU6-462P-201ENST00000362659 105 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 U8.3-201ENST00000363321 132 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 RNU6-288P-201ENST00000363690 104 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 RNU5A-8P-201ENST00000364102 114 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 RNU6-1280P-201ENST00000365211 107 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 SNORA40.4-201ENST00000390971 128 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 RNA5SP465-201ENST00000391195 109 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 FCF1P10-201ENST00000407590 479 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 MIR1304-201ENST00000408243 91 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 HMGB1P27-201ENST00000431429 603 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 LARP1BP3-201ENST00000437229 869 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AMD1P1-201ENST00000457220 922 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AC104685.1-201ENST00000502445 371 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 MTCYBP43-201ENST00000513621 740 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 Y_RNA.675-201ENST00000516389 149 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 RNU6-572P-201ENST00000516724 80 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 SNORA31.24-201ENST00000517232 57 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 DUXAP5-201ENST00000529668 529 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 DEFB108A-201ENST00000530110 222 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 OR5B19P-201ENST00000531766 928 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AC097468.3-201ENST00000607956 456 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AL138955.1-201ENST00000622881 1040 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AL138960.2-201ENST00000625145 535 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AC099654.8-201ENST00000637757 681 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 ANKRD36BP1-202ENST00000604892 1417 ntBASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
TRAV41A0A0B4J266 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 ZNF72P-201ENST00000425869 1908 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 MIR126-201ENST00000362291 85 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 RNU6-433P-201ENST00000363216 104 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 RNA5SP99-201ENST00000364020 114 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 Y_RNA.465-201ENST00000384293 102 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 RNU6-769P-201ENST00000384407 104 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 MIR29C-201ENST00000385231 88 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 RNA5SP213-201ENST00000391031 106 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 RNU6-482P-201ENST00000391068 107 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 RNU4-22P-201ENST00000411058 166 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 VPS26BP1-201ENST00000417155 755 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 RPS3AP37-201ENST00000419176 745 ntBASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.19□□□□□ -2.22
TRAV41A0A0B4J266 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms