Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 U3.39-201ENST00000408569 239 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 RN7SKP167-201ENST00000411047 285 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 RNU6-1135P-201ENST00000411083 103 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 RPL26P27-201ENST00000414397 437 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 RPS12P23-201ENST00000419579 400 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AL358075.3-201ENST00000426289 226 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AL031659.1-201ENST00000447075 539 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AC009220.1-201ENST00000451614 275 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 UBE2CP3-201ENST00000502715 450 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 RNU6-1183P-201ENST00000517054 60 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 MIR5571-201ENST00000577998 113 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AC005176.2-201ENST00000596933 147 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 RPL7P50-201ENST00000600588 727 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AC104465.1-201ENST00000611365 139 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AL109809.4-201ENST00000603520 2185 ntBASIC4.72□□□□□ -1.65
USP3Q9Y6I4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.72□□□□□ -1.65
USP3Q9Y6I4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
USP3Q9Y6I4 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
USP3Q9Y6I4 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
USP3Q9Y6I4 AL079305.1-201ENST00000623159 3008 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC126755.2-208ENST00000327792 462 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC138969.1-213ENST00000331436 462 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 SNORD32A-201ENST00000364805 84 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 Y_RNA.343-201ENST00000365354 112 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 MIR141-201ENST00000384975 95 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 Y_RNA.597-201ENST00000410463 100 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 RNU6-1001P-201ENST00000411265 100 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC092047.1-201ENST00000424997 240 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC012671.1-201ENST00000451912 203 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC005042.3-201ENST00000453230 174 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 RPL21P126-201ENST00000470049 478 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 RN7SL481P-201ENST00000477764 299 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 NIP7P2-201ENST00000485801 544 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC097462.2-201ENST00000504623 481 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 BTF3L4P4-201ENST00000506381 449 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC093840.1-201ENST00000511599 336 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 RNU6-1219P-201ENST00000516143 112 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 RNU6-58P-201ENST00000517143 103 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AL391261.3-201ENST00000557194 520 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 AC091178.1-203ENST00000584586 279 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 MESTIT1_1.1-201ENST00000618871 140 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 MAPK10-286ENST00000641208 8747 ntBASIC4.71□□□□□ -1.66
USP3Q9Y6I4 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.71□□□□□ -1.66
USP3Q9Y6I4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 RNU6-942P-201ENST00000363002 107 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 RNU6-923P-201ENST00000364753 107 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 Y_RNA.308-201ENST00000365043 101 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 MIR124-3-201ENST00000384866 87 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 MIR518D-201ENST00000385014 87 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 RPL18P10-201ENST00000425606 538 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 RPS12P10-201ENST00000427031 377 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 WARS2P1-201ENST00000429678 537 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 RPL37P4-201ENST00000448908 268 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 SNORD108-201ENST00000459332 71 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 AC016632.1-201ENST00000503994 196 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 RNA5SP54-201ENST00000516951 92 ntBASIC4.7□□□□□ -1.66
USP3Q9Y6I4 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
USP3Q9Y6I4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms