Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR8080-201ENST00000622224 89 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 AC073136.1-201ENST00000449426 2884 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 MIR494-201ENST00000349529 81 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 RNU6-508P-201ENST00000363231 103 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 RNA5SP187-201ENST00000384400 119 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 SNORA48.5-201ENST00000391143 135 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 RPL21P10-201ENST00000463521 490 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 AC010469.1-201ENST00000463864 576 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 AC006517.1-201ENST00000480485 328 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 RN7SL214P-201ENST00000487317 265 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 RNU6-1183P-201ENST00000517054 60 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 MIR6839-201ENST00000620425 113 ntBASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
VPS9D1Q9Y2B5 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 AC104623.2-202ENST00000623477 4002 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 MIR133B-201ENST00000362210 119 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 Z98749.2-208ENST00000381646 500 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 RNU6-1080P-201ENST00000383982 107 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 MIR518D-201ENST00000385014 87 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 MIR143-201ENST00000385300 106 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 SNORA26.3-201ENST00000391119 136 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 HMGN2P27-201ENST00000427352 270 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 AC079780.1-201ENST00000428259 207 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 RN7SL585P-201ENST00000470538 280 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 RN7SL177P-201ENST00000476596 299 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 RNA5SP362-201ENST00000516048 118 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 SNRPGP20-201ENST00000604477 205 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 RMST_8.1-201ENST00000610287 165 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 MIR6768-201ENST00000610734 72 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 AC074140.1-201ENST00000621617 208 ntBASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.29□□□□□ -1.56
VPS9D1Q9Y2B5 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 RNA5SP335-201ENST00000363817 110 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 RNU6-1014P-201ENST00000383940 103 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 U1.1-201ENST00000384101 164 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 SNORA70E-201ENST00000384492 135 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 AL691449.1-201ENST00000426570 421 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 RPL26P9-201ENST00000457466 433 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 MIR4489-201ENST00000578869 62 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 FKBP1AP1-201ENST00000594588 318 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 AC138965.3-201ENST00000623875 498 ntBASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
VPS9D1Q9Y2B5 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 MIR323A-201ENST00000362199 86 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 RNU6-228P-201ENST00000362700 106 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 RNU6-1124P-201ENST00000384169 107 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 SNORA16A-201ENST00000384342 137 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 MIR1263-201ENST00000408324 86 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 BX510359.3-201ENST00000422168 306 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 SNRPEP9-201ENST00000436794 238 ntBASIC5.27□□□□□ -1.57
VPS9D1Q9Y2B5 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms