Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 RPL21P112-201ENST00000434403 463 ntBASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 SNRPFP3-201ENST00000457792 225 ntBASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 RPS29P15-201ENST00000458329 171 ntBASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 TRBVB-201ENST00000477100 408 ntBASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 MIR486-1-201ENST00000612171 68 ntBASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 AC018529.3-201ENST00000624212 2254 ntBASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL17A1Q9UMD9 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 RNU6-1298P-201ENST00000362456 101 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 RNU6-552P-201ENST00000362869 119 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 Y_RNA.212-201ENST00000364177 102 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 RNU6-153P-201ENST00000364422 104 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 MIR19A-201ENST00000384878 82 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 RNU6-903P-201ENST00000391270 109 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 MTHFD2P2-201ENST00000407725 247 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AL139156.1-201ENST00000412785 841 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 SAGE2P-201ENST00000420011 2126 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AL139132.1-201ENST00000431587 344 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AC004383.1-201ENST00000438135 289 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AC020550.1-201ENST00000447385 163 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AC108860.1-201ENST00000484521 383 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 Y_RNA.670-201ENST00000516255 105 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 RNU6-1016P-201ENST00000516689 94 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 MTND4P7-201ENST00000523876 130 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 MIR4424-201ENST00000585257 86 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AL121992.2-201ENST00000606262 256 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AC010378.1-201ENST00000619270 362 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 AL138713.1-201ENST00000624026 2130 ntBASIC5.16□□□□□ -1.58
COL17A1Q9UMD9 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AL136360.1-201ENST00000503377 1900 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 RNU6-179P-201ENST00000363350 107 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 Y_RNA.276-201ENST00000364732 109 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AL391417.1-201ENST00000404100 426 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 RNU6-1050P-201ENST00000410388 107 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 NDUFB1P2-201ENST00000449477 176 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 RNU7-120P-201ENST00000459334 63 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC069499.1-201ENST00000489433 509 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC068305.1-201ENST00000497406 726 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 COX7A2P2-201ENST00000505291 250 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC009901.1-201ENST00000506703 541 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 SNORA25.11-201ENST00000515935 105 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 RNU7-200P-201ENST00000516105 62 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 Y_RNA.708-201ENST00000516950 96 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 HMGN1P28-201ENST00000521340 364 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AL360157.1-201ENST00000565962 87 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC023043.2-201ENST00000589678 1026 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC067852.4-201ENST00000590314 478 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AL008729.2-201ENST00000606393 473 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 AC116447.1-201ENST00000613153 453 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 DLEU2_5.1-201ENST00000615567 84 ntBASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL17A1Q9UMD9 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL17A1Q9UMD9 DDX18P3-201ENST00000404856 2007 ntBASIC5.15□□□□□ -1.59
COL17A1Q9UMD9 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL17A1Q9UMD9 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
COL17A1Q9UMD9 RNU6-593P-201ENST00000364716 112 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 Y_RNA.629-201ENST00000411368 105 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 MRPS18CP6-201ENST00000423587 223 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 RPL36AP6-201ENST00000435770 321 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 SNORD121B-201ENST00000458838 81 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 RN7SKP132-201ENST00000516001 208 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 RNU6-579P-201ENST00000516879 102 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 RNU6-844P-201ENST00000517175 102 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 IGLVIV-53-201ENST00000520107 367 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 AC103783.1-201ENST00000520506 373 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 AP000859.1-201ENST00000525536 307 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 MIR4775-201ENST00000581168 75 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 AC012669.1-201ENST00000603209 283 ntBASIC5.14□□□□□ -1.59
COL17A1Q9UMD9 AL590099.1-201ENST00000615276 138 ntBASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms