Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR3199-1-201ENST00000582434 88 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC023043.3-201ENST00000593113 385 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC008121.1-201ENST00000603244 268 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 AC008945.2-201ENST00000606056 604 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VPS28Q9UK41 AL109809.4-201ENST00000603520 2185 ntBASIC2.91□□□□□ -1.94
VPS28Q9UK41 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
VPS28Q9UK41 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
VPS28Q9UK41 MTND4P27-201ENST00000450813 1354 ntBASIC2.9□□□□□ -1.94
VPS28Q9UK41 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 RNU5A-6P-201ENST00000384136 116 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 RNU6-1042P-201ENST00000384204 107 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 MIR512-1-201ENST00000384913 84 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 Y_RNA.582-201ENST00000391023 95 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 SNORA26.7-201ENST00000391288 122 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 RNU2-9P-201ENST00000410194 145 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC087499.2-201ENST00000432861 149 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 MTCO2P18-201ENST00000457151 658 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 MTAPP1-201ENST00000489154 819 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC023141.11-201ENST00000508864 202 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 RNA5SP112-201ENST00000515937 99 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 RPPH1-2P-201ENST00000516688 293 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 AP004607.1-201ENST00000524456 203 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
VPS28Q9UK41 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 NDUFAF4P1-201ENST00000559425 519 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC025449.1-201ENST00000603896 529 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 AL670379.10-201ENST00000604330 253 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 AL670379.9-201ENST00000605428 253 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC008536.2-201ENST00000607284 349 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC011890.2-201ENST00000613393 294 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC009090.3-201ENST00000616553 565 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 AC048344.4-201ENST00000619744 527 ntBASIC2.9□□□□□ -1.95
VPS28Q9UK41 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
VPS28Q9UK41 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.9□□□□□ -1.95
VPS28Q9UK41 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 RNU1-35P-201ENST00000362782 153 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 Y_RNA.296-201ENST00000364930 108 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 RNU6-1103P-201ENST00000384150 107 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 RNU6-72P-201ENST00000384285 79 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 GSTA9P-201ENST00000406231 611 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 AL353621.1-201ENST00000418219 243 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 TOMM20P4-201ENST00000427861 435 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 Z98742.2-201ENST00000431564 187 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC000111.3-201ENST00000433478 193 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC105272.1-201ENST00000438604 198 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 RPL21P2-201ENST00000440049 481 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 RPL39P40-201ENST00000445481 146 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 MTND1P18-201ENST00000448191 573 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 TPT1P7-201ENST00000458300 517 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC006512.1-201ENST00000468816 291 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 RPL9P33-201ENST00000484311 566 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 MRPL42P6-201ENST00000486397 371 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 RPL22P13-201ENST00000493291 347 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 HMGB1P29-201ENST00000505659 499 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 SCARNA3-201ENST00000517097 143 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 FAM92A1P1-201ENST00000528023 890 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 GTF3AP2-201ENST00000557014 266 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC025678.1-201ENST00000567861 338 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 MIR4703-201ENST00000577728 79 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 ELOCP29-201ENST00000588193 334 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC090115.4-201ENST00000609970 188 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AL020991.1-201ENST00000612314 373 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 AC010338.1-201ENST00000621823 717 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 SCARNA4-202ENST00000625402 129 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.89□□□□□ -1.95
VPS28Q9UK41 ZNF680P1-201ENST00000436625 1469 ntBASIC2.89□□□□□ -1.95
VPS28Q9UK41 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 RNU6-486P-201ENST00000363116 107 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 SNORA5B-201ENST00000363786 132 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 CIR1P3-201ENST00000405137 479 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 FTH1P15-201ENST00000406984 280 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 AL663109.1-201ENST00000411498 844 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 AL139281.1-201ENST00000422120 335 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 AC104389.3-201ENST00000445629 235 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.88□□□□□ -1.95
VPS28Q9UK41 HIGD1AP2-201ENST00000446367 280 ntBASIC2.88□□□□□ -1.95
VPS28Q9UK41 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms