Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-1085P-201ENST00000363576 107 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC2.75□□□□□ -1.97
USP28Q96RU2 RNU6-1035P-201ENST00000384477 107 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AL356057.2-201ENST00000403318 432 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.75□□□□□ -1.97
USP28Q96RU2 NUP35P1-201ENST00000422734 947 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.75□□□□□ -1.97
USP28Q96RU2 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USP28Q96RU2 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.75□□□□□ -1.97
USP28Q96RU2 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC2.75□□□□□ -1.97
USP28Q96RU2 AC009296.1-201ENST00000443146 155 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC079781.2-201ENST00000446424 169 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AL109933.2-201ENST00000452651 260 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USP28Q96RU2 RPS20P20-201ENST00000460498 340 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 MRPS17P3-201ENST00000465453 385 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC126389.1-201ENST00000477436 290 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 RN7SL432P-201ENST00000484057 298 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC069439.1-201ENST00000494739 167 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC116562.3-201ENST00000506136 177 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.75□□□□□ -1.97
USP28Q96RU2 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC2.75□□□□□ -1.97
USP28Q96RU2 RNU6-928P-201ENST00000516876 104 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 RNA5SP402-201ENST00000517148 110 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.75□□□□□ -1.97
USP28Q96RU2 AC068587.5-201ENST00000528506 175 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 OR4R1P-201ENST00000529879 463 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 OR5AL2P-201ENST00000532185 920 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC078814.3-201ENST00000553036 491 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC103810.1-201ENST00000579873 453 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 LARP7P3-201ENST00000579888 337 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.75□□□□□ -1.97
USP28Q96RU2 AC007621.1-201ENST00000604544 437 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USP28Q96RU2 MIR7106-201ENST00000612419 65 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 U4.3-201ENST00000621047 82 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 MIR4275-201ENST00000636486 87 ntBASIC2.75□□□□□ -1.97
USP28Q96RU2 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
USP28Q96RU2 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.75□□□□□ -1.97
USP28Q96RU2 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
USP28Q96RU2 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
USP28Q96RU2 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.74□□□□□ -1.97
USP28Q96RU2 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
USP28Q96RU2 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
USP28Q96RU2 Y_RNA.38-201ENST00000362617 102 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 RNU6-1120P-201ENST00000362988 108 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 RNU6-960P-201ENST00000364056 120 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 RNU6-61P-201ENST00000365528 109 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
USP28Q96RU2 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.74□□□□□ -1.97
USP28Q96RU2 RNU6-606P-201ENST00000384721 111 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 AL359511.1-201ENST00000402970 211 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 AC096664.2-201ENST00000411843 406 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 MTCYBP8-201ENST00000422855 651 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 MTCO1P20-201ENST00000425366 358 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 MRPS10P2-201ENST00000431226 381 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.74□□□□□ -1.97
USP28Q96RU2 AL512844.2-201ENST00000433990 593 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 RBMX2P4-201ENST00000441256 376 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC2.74□□□□□ -1.97
USP28Q96RU2 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
USP28Q96RU2 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.74□□□□□ -1.97
USP28Q96RU2 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.74□□□□□ -1.97
USP28Q96RU2 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.74□□□□□ -1.97
USP28Q96RU2 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.74□□□□□ -1.97
USP28Q96RU2 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC2.74□□□□□ -1.97
USP28Q96RU2 AC092436.1-201ENST00000506450 503 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 RBBP4P6-201ENST00000508098 202 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 SCARNA15.2-201ENST00000516409 127 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 AP003034.1-201ENST00000534621 422 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.74□□□□□ -1.97
USP28Q96RU2 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.74□□□□□ -1.97
USP28Q96RU2 AC025678.1-201ENST00000567861 338 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 AP001094.1-201ENST00000579805 193 ntBASIC2.74□□□□□ -1.97
USP28Q96RU2 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.74□□□□□ -1.97
USP28Q96RU2 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
USP28Q96RU2 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
USP28Q96RU2 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.74□□□□□ -1.97
USP28Q96RU2 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
USP28Q96RU2 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.73□□□□□ -1.97
USP28Q96RU2 SDAD1P2-201ENST00000441308 2028 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
USP28Q96RU2 AC073343.1-201ENST00000328239 651 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 Y_RNA.9-201ENST00000362354 101 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 RNY4P14-201ENST00000363656 96 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 RNU6-288P-201ENST00000363690 104 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 MIR325-201ENST00000385260 98 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 MIR454-201ENST00000390180 115 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 CIR1P3-201ENST00000405137 479 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.73□□□□□ -1.97
USP28Q96RU2 NDUFB4P7-201ENST00000423198 363 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 MTCYBP5-201ENST00000423752 1135 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 AL365496.1-201ENST00000426885 215 ntBASIC2.73□□□□□ -1.97
USP28Q96RU2 GTF2IP20-201ENST00000431663 360 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms