Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 COX6CP5-201ENST00000527162 228 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 AL121821.2-201ENST00000556081 394 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC012213.3-201ENST00000577199 777 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC245014.2-201ENST00000603689 287 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC007621.1-201ENST00000604544 437 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC246785.4-201ENST00000605374 287 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC138649.3-201ENST00000622154 254 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC024940.5-201ENST00000622889 474 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC025034.2-201ENST00000623264 286 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 CU459211.1-201ENST00000635667 749 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC069528.2-201ENST00000624849 1991 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
SKA3Q8IX90 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SKA3Q8IX90 U3.12-201ENST00000364498 214 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 SNORA68.1-201ENST00000364537 132 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 RNU6-61P-201ENST00000365528 109 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AL513475.1-201ENST00000406602 315 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 USP9YP6-201ENST00000413550 854 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC009963.1-201ENST00000417265 157 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AL160275.3-201ENST00000423876 471 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SKA3Q8IX90 MYL8P-204ENST00000431574 518 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 GPR143P-201ENST00000434155 205 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 MTATP6P16-201ENST00000434543 526 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AL161651.1-201ENST00000440882 223 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC079448.1-201ENST00000449377 373 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC092001.1-201ENST00000453012 261 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 RPL31P3-201ENST00000458430 332 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 TRBV1-201ENST00000476502 284 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 MRPL42P6-201ENST00000486397 371 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC116562.3-201ENST00000506136 177 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 ARL2BPP4-201ENST00000506854 471 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC114781.4-201ENST00000513707 639 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 RNU5F-8P-201ENST00000515941 111 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 SNORD19.2-201ENST00000516978 73 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 MTCYBP20-201ENST00000524239 1129 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC068587.5-201ENST00000528506 175 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 MIR4658-201ENST00000584344 65 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 RSL24D1P11-201ENST00000591045 491 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC005261.5-201ENST00000596280 355 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 DEFB131E-202ENST00000602581 683 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AL391813.1-201ENST00000603098 260 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC126118.1-201ENST00000607744 628 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC006566.1-201ENST00000608943 513 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC093648.1-201ENST00000623546 606 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC004520.1-201ENST00000608362 1413 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 AC103710.2-202ENST00000641454 2853 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 CKAP2P1-201ENST00000555477 2049 ntBASIC2.13□□□□□ -2.07
SKA3Q8IX90 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
SKA3Q8IX90 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
SKA3Q8IX90 SNORD3E-201ENST00000362899 217 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 Y_RNA.111-201ENST00000363248 100 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 RNU6-898P-201ENST00000365627 104 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 RNU6-301P-201ENST00000384277 107 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 RNU6-166P-201ENST00000384371 107 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 RNU6-348P-201ENST00000384386 107 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 SNORA41-201ENST00000384675 132 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 SNORA40C-201ENST00000391285 128 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC133104.1-201ENST00000429100 218 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 MTCO2P16-201ENST00000436962 677 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 OSTCP8-201ENST00000445117 448 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC010424.1-201ENST00000506336 297 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 RBBP4P6-201ENST00000508098 202 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AC117532.1-201ENST00000514638 323 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 RNU6-430P-201ENST00000517078 107 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 SCARNA11.3-201ENST00000517276 130 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC2.12□□□□□ -2.07
SKA3Q8IX90 AP000873.5-201ENST00000533906 236 ntBASIC2.12□□□□□ -2.07
SKA3Q8IX90 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 176.3 ms