Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AP000238.1-201ENST00000608759 426 ntBASIC0.29□□□□□ -2.36
PRKDCP78527 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC0.29□□□□□ -2.36
PRKDCP78527 RPL37P10-201ENST00000412884 288 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 UBE2FP1-201ENST00000416536 447 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 TRAPPC13P1-201ENST00000435991 1062 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 RNA5SP57-201ENST00000459463 123 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
PRKDCP78527 AC138853.1-201ENST00000503549 823 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 CR383656.7-201ENST00000548164 174 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC005668.1-201ENST00000571142 476 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 MTND4P16-201ENST00000466108 1367 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.28□□□□□ -2.36
PRKDCP78527 SNORA51.6-201ENST00000384151 125 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AL121578.1-201ENST00000428051 892 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC0.28□□□□□ -2.36
PRKDCP78527 AC023512.1-201ENST00000444513 499 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC0.28□□□□□ -2.36
PRKDCP78527 MIR4299-201ENST00000577899 72 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC007349.4-201ENST00000608114 532 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
PRKDCP78527 RNU6-1222P-201ENST00000384615 107 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AL355615.1-201ENST00000406187 641 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC006461.1-201ENST00000412637 326 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 USP9YP26-201ENST00000421008 661 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC007742.1-201ENST00000425789 329 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 USP9YP18-201ENST00000425912 695 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC244023.1-201ENST00000426884 112 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC0.28□□□□□ -2.36
PRKDCP78527 NDUFA5P10-201ENST00000432147 357 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 USP9YP24-201ENST00000434374 697 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 ELOCP26-201ENST00000436067 329 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 Z82210.1-201ENST00000440037 231 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 USP9YP17-201ENST00000444617 696 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC112492.4-201ENST00000456549 352 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC0.28□□□□□ -2.36
PRKDCP78527 AC006512.1-201ENST00000468816 291 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 RPS27P22-201ENST00000478056 241 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC242498.1-201ENST00000604134 111 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AL022345.1-201ENST00000607292 135 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC243994.1-201ENST00000618627 109 ntBASIC0.28□□□□□ -2.36
PRKDCP78527 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.28□□□□□ -2.37
PRKDCP78527 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.28□□□□□ -2.37
PRKDCP78527 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.37
PRKDCP78527 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.28□□□□□ -2.37
PRKDCP78527 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC0.28□□□□□ -2.37
PRKDCP78527 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.28□□□□□ -2.37
PRKDCP78527 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC0.28□□□□□ -2.37
PRKDCP78527 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.28□□□□□ -2.37
PRKDCP78527 SNORD124-201ENST00000459577 104 ntBASIC0.28□□□□□ -2.37
PRKDCP78527 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.28□□□□□ -2.37
PRKDCP78527 SNORA31.22-201ENST00000517204 135 ntBASIC0.28□□□□□ -2.37
PRKDCP78527 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.28□□□□□ -2.37
PRKDCP78527 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC0.27□□□□□ -2.37
PRKDCP78527 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.27□□□□□ -2.37
PRKDCP78527 SSR1P1-201ENST00000407630 814 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 BEND7P1-201ENST00000422058 457 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.27□□□□□ -2.37
PRKDCP78527 CYCTP-201ENST00000504253 315 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.27□□□□□ -2.37
PRKDCP78527 DUXAP1-201ENST00000556632 463 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 MTCYBP22-201ENST00000603788 447 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.27□□□□□ -2.37
PRKDCP78527 MIR92A1-201ENST00000385233 78 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 RNU2-7P-201ENST00000410794 178 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AC096920.1-201ENST00000423991 241 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 SNORA70.16-201ENST00000516390 95 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC0.27□□□□□ -2.37
PRKDCP78527 AC012414.6-201ENST00000568241 401 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC0.27□□□□□ -2.37
PRKDCP78527 BNIP3P16-201ENST00000589779 534 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 BBIP1P1-201ENST00000602999 279 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.27□□□□□ -2.37
PRKDCP78527 RNU6-884P-201ENST00000363889 107 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 RNU1-36P-201ENST00000365130 165 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC0.27□□□□□ -2.37
PRKDCP78527 OR6C72P-201ENST00000451403 892 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC0.27□□□□□ -2.37
PRKDCP78527 AC104689.1-201ENST00000473356 768 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.27□□□□□ -2.37
PRKDCP78527 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.27□□□□□ -2.37
PRKDCP78527 MIR4493-201ENST00000584016 73 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 MZT1P2-201ENST00000604387 248 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 AL357075.2-201ENST00000614906 189 ntBASIC0.27□□□□□ -2.37
PRKDCP78527 MIR10B-201ENST00000385011 110 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC0.26□□□□□ -2.37
PRKDCP78527 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.26□□□□□ -2.37
PRKDCP78527 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.26□□□□□ -2.37
PRKDCP78527 AC021146.2-201ENST00000504736 556 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC0.26□□□□□ -2.37
PRKDCP78527 MTCO2P22-201ENST00000603246 681 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 RNU6-72P-201ENST00000384285 79 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 AL356776.1-201ENST00000406574 447 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 AL359704.1-201ENST00000411586 781 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 ZNF92P1Y-201ENST00000415010 1191 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 AL109913.1-201ENST00000421173 514 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 SFR1P2-201ENST00000421841 730 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 PGBD4P5-201ENST00000445958 426 ntBASIC0.26□□□□□ -2.37
PRKDCP78527 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms