Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 RNU7-40P-201ENST00000516397 64 ntBASIC0.93□□□□□ -2.26
SDC4P31431 SNORA31.16-201ENST00000516773 139 ntBASIC0.93□□□□□ -2.26
SDC4P31431 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.93□□□□□ -2.26
SDC4P31431 AP000907.2-201ENST00000530827 353 ntBASIC0.93□□□□□ -2.26
SDC4P31431 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.93□□□□□ -2.26
SDC4P31431 AC069304.2-201ENST00000605154 435 ntBASIC0.93□□□□□ -2.26
SDC4P31431 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
SDC4P31431 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.93□□□□□ -2.26
SDC4P31431 AC138627.2-201ENST00000624202 601 ntBASIC0.93□□□□□ -2.26
SDC4P31431 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.92□□□□□ -2.26
SDC4P31431 SNORD56.4-201ENST00000363883 71 ntBASIC0.92□□□□□ -2.26
SDC4P31431 RNU1-39P-201ENST00000383897 165 ntBASIC0.92□□□□□ -2.26
SDC4P31431 SNORA70.7-201ENST00000384159 133 ntBASIC0.92□□□□□ -2.26
SDC4P31431 MIR597-201ENST00000384968 97 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.92□□□□□ -2.26
SDC4P31431 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC0.92□□□□□ -2.26
SDC4P31431 RPL39P29-201ENST00000447779 157 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC0.92□□□□□ -2.26
SDC4P31431 MTND2P6-201ENST00000455337 1030 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC0.92□□□□□ -2.26
SDC4P31431 AC026410.2-201ENST00000460281 156 ntBASIC0.92□□□□□ -2.26
SDC4P31431 MTCYBP16-201ENST00000509187 1129 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AC025465.3-201ENST00000510570 311 ntBASIC0.92□□□□□ -2.26
SDC4P31431 RNU6-703P-201ENST00000516946 107 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AC103833.1-201ENST00000517442 172 ntBASIC0.92□□□□□ -2.26
SDC4P31431 CBX3P8-201ENST00000532412 525 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC0.92□□□□□ -2.26
SDC4P31431 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.92□□□□□ -2.26
SDC4P31431 ADAM3B-201ENST00000569937 840 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AC090615.1-201ENST00000577519 154 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC0.92□□□□□ -2.26
SDC4P31431 AC087045.1-201ENST00000605856 382 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AL355802.4-201ENST00000607635 548 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AC010133.1-201ENST00000615809 842 ntBASIC0.92□□□□□ -2.26
SDC4P31431 RMST_10.1-201ENST00000616309 154 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AL121890.5-201ENST00000620848 304 ntBASIC0.92□□□□□ -2.26
SDC4P31431 AC132825.7-201ENST00000638744 335 ntBASIC0.92□□□□□ -2.26
SDC4P31431 SLC10A5P1-201ENST00000379063 1306 ntBASIC0.91□□□□□ -2.26
SDC4P31431 OR5T3-201ENST00000303059 1023 ntBASIC0.91□□□□□ -2.26
SDC4P31431 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
SDC4P31431 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
SDC4P31431 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.91□□□□□ -2.26
SDC4P31431 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC0.91□□□□□ -2.26
SDC4P31431 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
SDC4P31431 MTCO1P44-201ENST00000441935 243 ntBASIC0.91□□□□□ -2.26
SDC4P31431 AC010460.2-201ENST00000509054 677 ntBASIC0.91□□□□□ -2.26
SDC4P31431 RNU6-113P-201ENST00000516653 101 ntBASIC0.91□□□□□ -2.26
SDC4P31431 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.91□□□□□ -2.26
SDC4P31431 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.91□□□□□ -2.26
SDC4P31431 AP003122.4-201ENST00000530980 758 ntBASIC0.91□□□□□ -2.26
SDC4P31431 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC0.91□□□□□ -2.26
SDC4P31431 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC0.91□□□□□ -2.26
SDC4P31431 AC090115.3-201ENST00000553218 849 ntBASIC0.91□□□□□ -2.26
SDC4P31431 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC0.91□□□□□ -2.26
SDC4P31431 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC0.91□□□□□ -2.26
SDC4P31431 HSPE1P19-201ENST00000603327 295 ntBASIC0.91□□□□□ -2.26
SDC4P31431 NDUFA8P1-201ENST00000605525 367 ntBASIC0.91□□□□□ -2.26
SDC4P31431 MIR1264-201ENST00000616374 69 ntBASIC0.91□□□□□ -2.26
SDC4P31431 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
SDC4P31431 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
SDC4P31431 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC0.9□□□□□ -2.26
SDC4P31431 RNU1-58P-201ENST00000362413 163 ntBASIC0.9□□□□□ -2.27
SDC4P31431 RNU6-271P-201ENST00000363858 105 ntBASIC0.9□□□□□ -2.27
SDC4P31431 RNU6-637P-201ENST00000384050 107 ntBASIC0.9□□□□□ -2.27
SDC4P31431 SNORD14D-201ENST00000384390 87 ntBASIC0.9□□□□□ -2.27
SDC4P31431 RNA5SP100-201ENST00000410903 110 ntBASIC0.9□□□□□ -2.27
SDC4P31431 RNA5SP59-201ENST00000410922 110 ntBASIC0.9□□□□□ -2.27
SDC4P31431 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
SDC4P31431 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC0.9□□□□□ -2.27
SDC4P31431 CALM1P1-201ENST00000442082 433 ntBASIC0.9□□□□□ -2.27
SDC4P31431 CECR9-201ENST00000453421 199 ntBASIC0.9□□□□□ -2.27
SDC4P31431 AC112771.1-201ENST00000463581 102 ntBASIC0.9□□□□□ -2.27
SDC4P31431 RPL30P7-201ENST00000479312 323 ntBASIC0.9□□□□□ -2.27
SDC4P31431 RNA5SP102-201ENST00000516865 106 ntBASIC0.9□□□□□ -2.27
SDC4P31431 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.9□□□□□ -2.27
SDC4P31431 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.9□□□□□ -2.27
SDC4P31431 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC0.9□□□□□ -2.27
SDC4P31431 AC002400.1-201ENST00000569310 726 ntBASIC0.9□□□□□ -2.27
SDC4P31431 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC0.9□□□□□ -2.27
SDC4P31431 VN1R107P-201ENST00000601784 209 ntBASIC0.9□□□□□ -2.27
SDC4P31431 FAM71BP1-201ENST00000604431 523 ntBASIC0.9□□□□□ -2.27
SDC4P31431 RNU6-91P-201ENST00000607774 107 ntBASIC0.9□□□□□ -2.27
SDC4P31431 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.9□□□□□ -2.27
SDC4P31431 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.9□□□□□ -2.27
SDC4P31431 ATM-228ENST00000639240 498 ntTSL 5 BASIC0.9□□□□□ -2.27
SDC4P31431 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
SDC4P31431 SNORA18.2-201ENST00000383865 132 ntBASIC0.89□□□□□ -2.27
SDC4P31431 RNU6-611P-201ENST00000384276 104 ntBASIC0.89□□□□□ -2.27
SDC4P31431 SNORA48.1-201ENST00000390879 135 ntBASIC0.89□□□□□ -2.27
SDC4P31431 PIGPP2-201ENST00000411569 458 ntBASIC0.89□□□□□ -2.27
SDC4P31431 DNAJA1P2-201ENST00000421360 1197 ntBASIC0.89□□□□□ -2.27
SDC4P31431 AC092634.2-201ENST00000428146 1010 ntBASIC0.89□□□□□ -2.27
SDC4P31431 OFD1P3Y-201ENST00000453312 783 ntBASIC0.89□□□□□ -2.27
SDC4P31431 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.89□□□□□ -2.27
SDC4P31431 AL133373.1-201ENST00000497098 94 ntBASIC0.89□□□□□ -2.27
SDC4P31431 AF131216.2-201ENST00000512316 564 ntBASIC0.89□□□□□ -2.27
SDC4P31431 RN7SKP265-201ENST00000516448 223 ntBASIC0.89□□□□□ -2.27
SDC4P31431 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.89□□□□□ -2.27
SDC4P31431 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.89□□□□□ -2.27
SDC4P31431 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms