Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 TAF9P1-201ENST00000445421 515 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 USP9YP12-201ENST00000450481 570 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 MTATP6P7-201ENST00000453315 681 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 TAF9P2-201ENST00000454958 515 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 AC079804.2-201ENST00000490376 200 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXA9P31269 SNORA31.3-201ENST00000516029 96 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 RNU6-927P-201ENST00000516199 100 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 AC022634.1-201ENST00000520765 532 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXA9P31269 AC022878.1-201ENST00000530684 149 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXA9P31269 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXA9P31269 AC002545.1-201ENST00000592511 181 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 AC112191.3-201ENST00000604371 277 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 AC012360.2-201ENST00000609349 391 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXA9P31269 AP000553.5-201ENST00000641933 54 ntBASIC2.11□□□□□ -2.07
HOXA9P31269 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
HOXA9P31269 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.11□□□□□ -2.07
HOXA9P31269 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.11□□□□□ -2.07
HOXA9P31269 RNU2-36P-201ENST00000410361 191 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 RPL17P12-201ENST00000413391 526 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 ELOCP17-201ENST00000414751 326 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AC009518.2-201ENST00000418056 731 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXA9P31269 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AL589872.1-201ENST00000426602 288 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 MTND1P28-201ENST00000435623 950 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 RPL7P54-201ENST00000438336 674 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXA9P31269 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HOXA9P31269 FABP5P13-201ENST00000452144 328 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA9P31269 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXA9P31269 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXA9P31269 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA9P31269 MTND5P13-201ENST00000513046 1079 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 MIR514B-201ENST00000516774 80 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AP006587.4-201ENST00000526053 529 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA9P31269 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXA9P31269 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXA9P31269 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.1□□□□□ -2.07
HOXA9P31269 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXA9P31269 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXA9P31269 AC121247.2-201ENST00000604776 136 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AC121334.2-201ENST00000605387 271 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 RNU6-87P-201ENST00000607561 108 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXA9P31269 AC239868.4-201ENST00000608318 671 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 Y_RNA.783-201ENST00000613546 102 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AL161423.1-201ENST00000613700 262 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AC006338.1-201ENST00000618453 749 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AC078883.4-201ENST00000623218 367 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AL603839.4-201ENST00000624658 1005 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 AC080128.1-201ENST00000474389 1917 ntBASIC2.1□□□□□ -2.07
HOXA9P31269 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
HOXA9P31269 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
HOXA9P31269 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXA9P31269 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXA9P31269 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXA9P31269 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.07
HOXA9P31269 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA9P31269 RNU6-701P-201ENST00000384059 107 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 RNU6-140P-201ENST00000384566 108 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
HOXA9P31269 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXA9P31269 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 SRIP2-201ENST00000428470 166 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXA9P31269 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA9P31269 RPL12P25-201ENST00000455592 494 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 AC114786.4-201ENST00000508771 728 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA9P31269 AC022447.1-201ENST00000515358 464 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 SCARNA17.1-201ENST00000516211 143 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 SCARNA17.2-201ENST00000516334 143 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA9P31269 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.09□□□□□ -2.07
HOXA9P31269 RPL21P5-201ENST00000554662 472 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 AC110588.1-201ENST00000559699 137 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 AL138976.2-201ENST00000563989 694 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA9P31269 AC008088.1-201ENST00000580993 280 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 MIR5002-201ENST00000584713 97 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 Z99497.2-201ENST00000603634 310 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 AL161729.4-201ENST00000604650 476 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 AC091304.9-201ENST00000612091 226 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA9P31269 SCARNA17.4-201ENST00000614296 143 ntBASIC2.09□□□□□ -2.07
HOXA9P31269 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXA9P31269 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXA9P31269 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
HOXA9P31269 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
HOXA9P31269 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.08
HOXA9P31269 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.08□□□□□ -2.08
HOXA9P31269 U3.4-201ENST00000363352 213 ntBASIC2.08□□□□□ -2.08
HOXA9P31269 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms