Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC093303.1-201ENST00000514549 295 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD9P28356 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXD9P28356 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXD9P28356 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 MIR2682-201ENST00000580305 110 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 MIR5690-201ENST00000583739 73 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 MIR5692C1-201ENST00000585309 91 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXD9P28356 AC005000.2-201ENST00000605468 310 ntBASIC3.33□□□□□ -1.88
HOXD9P28356 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD9P28356 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXD9P28356 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD9P28356 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD9P28356 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD9P28356 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD9P28356 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD9P28356 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD9P28356 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD9P28356 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD9P28356 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
HOXD9P28356 Y_RNA.216-201ENST00000364205 93 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 RNU6-593P-201ENST00000364716 112 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 RNU6-128P-201ENST00000383976 107 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 SNORA36C-201ENST00000384289 132 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 MIR184-201ENST00000384962 84 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 CISD1P1-201ENST00000393907 327 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
HOXD9P28356 RNA5SP111-201ENST00000411386 101 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 AC092809.3-201ENST00000415453 231 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXD9P28356 UBE2D3P2-201ENST00000424409 445 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 RPL26P6-201ENST00000440913 438 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXD9P28356 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD9P28356 RN7SL863P-201ENST00000462370 296 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 AC010401.1-201ENST00000463867 348 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.32□□□□□ -1.88
HOXD9P28356 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD9P28356 CYCSP27-201ENST00000527643 293 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD9P28356 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD9P28356 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 AP000942.4-201ENST00000604811 241 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 ATP1B3P1-201ENST00000605365 821 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXD9P28356 AC022418.1-201ENST00000624118 445 ntBASIC3.32□□□□□ -1.88
HOXD9P28356 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD9P28356 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
HOXD9P28356 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD9P28356 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXD9P28356 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXD9P28356 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD9P28356 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD9P28356 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
HOXD9P28356 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
HOXD9P28356 DEFB108F-201ENST00000344638 222 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 RNU6-371P-201ENST00000364283 108 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 Y_RNA.445-201ENST00000384168 102 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 SNORA48.2-201ENST00000390926 124 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 RNA5SP31-201ENST00000411144 127 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD9P28356 AC245054.2-201ENST00000415639 319 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD9P28356 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD9P28356 AL160275.3-201ENST00000423876 471 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXD9P28356 BX679664.1-201ENST00000434429 253 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD9P28356 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD9P28356 Y_RNA.653-201ENST00000459091 95 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AC006445.1-201ENST00000491925 405 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 MTCYBP40-201ENST00000509390 1135 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD9P28356 SCARNA20.6-201ENST00000517251 106 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AC022634.1-201ENST00000520765 532 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD9P28356 AC004024.1-201ENST00000549244 247 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 SNRPGP18-201ENST00000553000 214 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXD9P28356 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD9P28356 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD9P28356 uc_338.22-201ENST00000622722 187 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AC244517.12-201ENST00000623581 663 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD9P28356 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HOXD9P28356 AC002546.1-201ENST00000588041 2504 ntBASIC3.31□□□□□ -1.88
HOXD9P28356 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXD9P28356 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms