Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RNU6-891P-201ENST00000384280 111 ntBASIC0.71□□□□□ -2.3
TNFP01375 MIR508-201ENST00000384857 115 ntBASIC0.71□□□□□ -2.3
TNFP01375 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.71□□□□□ -2.3
TNFP01375 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC0.71□□□□□ -2.3
TNFP01375 CST2P1-201ENST00000425770 87 ntBASIC0.71□□□□□ -2.3
TNFP01375 RPL36AP48-201ENST00000485521 314 ntBASIC0.71□□□□□ -2.3
TNFP01375 AP001025.1-201ENST00000486139 332 ntBASIC0.71□□□□□ -2.3
TNFP01375 AC108729.1-201ENST00000487812 947 ntBASIC0.71□□□□□ -2.3
TNFP01375 COX7A2P2-201ENST00000505291 250 ntBASIC0.71□□□□□ -2.3
TNFP01375 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.71□□□□□ -2.3
TNFP01375 AL132857.1-201ENST00000555180 708 ntBASIC0.71□□□□□ -2.3
TNFP01375 AC090079.2-201ENST00000575289 768 ntBASIC0.71□□□□□ -2.3
TNFP01375 AC012676.2-201ENST00000619258 186 ntBASIC0.71□□□□□ -2.3
TNFP01375 SEC63P2-201ENST00000503863 1939 ntBASIC0.71□□□□□ -2.3
TNFP01375 ICE2P2-201ENST00000483823 2787 ntBASIC0.7□□□□□ -2.3
TNFP01375 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
TNFP01375 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
TNFP01375 MIR598-201ENST00000384868 97 ntBASIC0.7□□□□□ -2.3
TNFP01375 USP9YP19-201ENST00000412165 485 ntBASIC0.7□□□□□ -2.3
TNFP01375 CCDC58P2-201ENST00000417131 366 ntBASIC0.7□□□□□ -2.3
TNFP01375 USP9YP13-201ENST00000417797 480 ntBASIC0.7□□□□□ -2.3
TNFP01375 USP9YP26-201ENST00000421008 661 ntBASIC0.7□□□□□ -2.3
TNFP01375 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC0.7□□□□□ -2.3
TNFP01375 USP9YP18-201ENST00000425912 695 ntBASIC0.7□□□□□ -2.3
TNFP01375 MTCYBP32-201ENST00000427945 1084 ntBASIC0.7□□□□□ -2.3
TNFP01375 AL161651.1-201ENST00000440882 223 ntBASIC0.7□□□□□ -2.3
TNFP01375 KATNBL1P3-201ENST00000443475 909 ntBASIC0.7□□□□□ -2.3
TNFP01375 USP9YP17-201ENST00000444617 696 ntBASIC0.7□□□□□ -2.3
TNFP01375 AC245102.2-201ENST00000448956 180 ntBASIC0.7□□□□□ -2.3
TNFP01375 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
TNFP01375 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC0.7□□□□□ -2.3
TNFP01375 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC0.7□□□□□ -2.3
TNFP01375 AC112198.4-201ENST00000515450 351 ntBASIC0.7□□□□□ -2.3
TNFP01375 RNA5SP404-201ENST00000517118 132 ntBASIC0.7□□□□□ -2.3
TNFP01375 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC0.7□□□□□ -2.3
TNFP01375 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC0.7□□□□□ -2.3
TNFP01375 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.7□□□□□ -2.3
TNFP01375 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
TNFP01375 MTCO1P23-201ENST00000415223 1526 ntBASIC0.69□□□□□ -2.3
TNFP01375 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.69□□□□□ -2.3
TNFP01375 RNU1-133P-201ENST00000364867 167 ntBASIC0.69□□□□□ -2.3
TNFP01375 AC234064.1-201ENST00000436312 247 ntBASIC0.69□□□□□ -2.3
TNFP01375 TPRKBP1-201ENST00000456243 481 ntBASIC0.69□□□□□ -2.3
TNFP01375 RPS20P20-201ENST00000460498 340 ntBASIC0.69□□□□□ -2.3
TNFP01375 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
TNFP01375 AC103851.1-201ENST00000506833 274 ntBASIC0.69□□□□□ -2.3
TNFP01375 RNU6-667P-201ENST00000517186 102 ntBASIC0.69□□□□□ -2.3
TNFP01375 CYCSP27-201ENST00000527643 293 ntBASIC0.69□□□□□ -2.3
TNFP01375 BBIP1P1-201ENST00000602999 279 ntBASIC0.69□□□□□ -2.3
TNFP01375 AC106800.4-201ENST00000614905 153 ntBASIC0.69□□□□□ -2.3
TNFP01375 AL078604.3-201ENST00000615580 211 ntBASIC0.69□□□□□ -2.3
TNFP01375 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.69□□□□□ -2.3
TNFP01375 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.68□□□□□ -2.3
TNFP01375 RNU6-878P-201ENST00000384578 110 ntBASIC0.68□□□□□ -2.3
TNFP01375 MIR146A-201ENST00000385201 99 ntBASIC0.68□□□□□ -2.3
TNFP01375 RNU1-139P-201ENST00000391307 165 ntBASIC0.68□□□□□ -2.3
TNFP01375 MIR1302-8-201ENST00000408342 128 ntBASIC0.68□□□□□ -2.3
TNFP01375 PTGES3P4-201ENST00000426243 356 ntBASIC0.68□□□□□ -2.3
TNFP01375 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.68□□□□□ -2.3
TNFP01375 AC117454.1-201ENST00000491120 168 ntBASIC0.68□□□□□ -2.3
TNFP01375 RNA5SP436-201ENST00000516020 115 ntBASIC0.68□□□□□ -2.3
TNFP01375 AP006587.4-201ENST00000526053 529 ntBASIC0.68□□□□□ -2.3
TNFP01375 CENPUP1-201ENST00000526649 1202 ntBASIC0.68□□□□□ -2.3
TNFP01375 AL731537.2-201ENST00000561565 951 ntBASIC0.68□□□□□ -2.3
TNFP01375 CYP4A27P-201ENST00000567218 190 ntBASIC0.68□□□□□ -2.3
TNFP01375 ADAM3B-201ENST00000569937 840 ntBASIC0.68□□□□□ -2.3
TNFP01375 AC024257.5-201ENST00000612739 531 ntBASIC0.68□□□□□ -2.3
TNFP01375 AC017037.3-201ENST00000625016 472 ntBASIC0.68□□□□□ -2.3
TNFP01375 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
TNFP01375 MIR613-201ENST00000385248 95 ntBASIC0.67□□□□□ -2.3
TNFP01375 RNA5SP100-201ENST00000410903 110 ntBASIC0.67□□□□□ -2.3
TNFP01375 RNA5SP59-201ENST00000410922 110 ntBASIC0.67□□□□□ -2.3
TNFP01375 RPS27P16-201ENST00000425758 201 ntBASIC0.67□□□□□ -2.3
TNFP01375 PSMA6P3-201ENST00000428242 164 ntBASIC0.67□□□□□ -2.3
TNFP01375 TRIM60P13-201ENST00000432350 1283 ntBASIC0.67□□□□□ -2.3
TNFP01375 RPL7P34-201ENST00000433316 712 ntBASIC0.67□□□□□ -2.3
TNFP01375 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC0.67□□□□□ -2.3
TNFP01375 DUXAP8-207ENST00000456786 622 ntBASIC0.67□□□□□ -2.3
TNFP01375 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.67□□□□□ -2.3
TNFP01375 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.67□□□□□ -2.3
TNFP01375 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.67□□□□□ -2.3
TNFP01375 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.67□□□□□ -2.3
TNFP01375 RAB11AP2-201ENST00000545905 639 ntBASIC0.67□□□□□ -2.3
TNFP01375 AC012414.6-201ENST00000568241 401 ntBASIC0.67□□□□□ -2.3
TNFP01375 ROCK1P1-201ENST00000573767 549 ntBASIC0.67□□□□□ -2.3
TNFP01375 AC005786.1-201ENST00000588553 154 ntBASIC0.67□□□□□ -2.3
TNFP01375 VN1R88P-201ENST00000596787 292 ntBASIC0.67□□□□□ -2.3
TNFP01375 AL022345.1-201ENST00000607292 135 ntBASIC0.67□□□□□ -2.3
TNFP01375 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.67□□□□□ -2.3
TNFP01375 AL109620.1-201ENST00000618738 1197 ntBASIC0.67□□□□□ -2.3
TNFP01375 MIR8063-201ENST00000621930 81 ntBASIC0.67□□□□□ -2.3
TNFP01375 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.67□□□□□ -2.3
TNFP01375 AL442644.1-201ENST00000454390 3105 ntBASIC0.67□□□□□ -2.3
TNFP01375 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
TNFP01375 AC009541.1-201ENST00000438279 2662 ntBASIC0.66□□□□□ -2.3
TNFP01375 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
TNFP01375 UBE2Q2P1-202ENST00000354771 883 ntBASIC0.66□□□□□ -2.3
TNFP01375 RNU6-564P-201ENST00000410983 104 ntBASIC0.66□□□□□ -2.3
TNFP01375 AC069282.1-201ENST00000411911 526 ntBASIC0.66□□□□□ -2.3
TNFP01375 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms